PDB Entry (6vn3)

Download

Visualizer: MichelaNGLo

PDB ID: 6vn3 Resolution: 2.73 Å Exp. Method: X-RAY DIFFRACTION
PMID: 32302140 DOI: 10.1021/acs.jmedchem.0c00245
Protein
Protein Name: Ubiquitin carboxyl-terminal hydrolase 7
Protein Class: HYDROLASE
Uniprot ID/ACC: Q93009 (UBP7_HUMAN) Organism: Homo sapiens
Gene Symbol: USP7 Gene ID: 7874
Pocket Descriptors
Volume: 264.704 Depth: 18.9623
Hydrophobicity: 0.691057 Drug Score: 0.0257927
Pocket Similarity: Calculate
Ligand
Ligand Name:   1-{[7-(5-chloro-2-{[(3R,4S)-4-fluoropyrrolidin-3-yl]oxy}-3-methylphenyl)thieno[3,2-b]pyridin-2-yl]methyl}-1H-pyrrole-2,5-dione
HET ID:   R3Y PubChem:   138610287
DrugBank:   - ChEMBL:   -
Canonical SMILES:   F[C@H]1CNC[C@H]1Oc1c(C)cc(cc1c1ccnc2c1sc(c2)CN1C(=O)CCC1=O)Cl
Standard InChI:   InChI=1S/C23H21ClFN3O3S/c1-12-6-13(24)7-16(22(12)31-19-10-26-9-17(19)25)15-4-5-27-18-8-14(32-23(15)18)11-28-20(29)2-3-21(28)30/h4-8,17,19,26H,2-3,9-11H2,1H3/t17-,19+/m0/s1
Molecular Formula:   C23H21ClFN3O3S Mol. Weight:   473.94754 Heavy Atoms:   32
Charge:   0 Is Chiral:   True logP:   4.5295
HBD:   1 HBA:   7 TPSA:   99.77
#Bonds:   38 #Rotatable Bonds:   5 Shape Complexity:   0.3478261
Stereocomplexity:   0.08695652 Ligand Type:   Small Molecule
Binding Affinity
-