PDB Entry (6vn3) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 6vn3 | Resolution: 2.73 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 32302140 | DOI: 10.1021/acs.jmedchem.0c00245 | |
Protein |
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Protein Name: Ubiquitin carboxyl-terminal hydrolase 7 | |
Protein Class: HYDROLASE | |
Uniprot ID/ACC: Q93009 (UBP7_HUMAN) | Organism: Homo sapiens |
Gene Symbol: USP7 | Gene ID: 7874 |
Pocket Descriptors | |
Volume: 264.704 | Depth: 18.9623 |
Hydrophobicity: 0.691057 | Drug Score: 0.0257927 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 1-{[7-(5-chloro-2-{[(3R,4S)-4-fluoropyrrolidin-3-yl]oxy}-3-methylphenyl)thieno[3,2-b]pyridin-2-yl]methyl}-1H-pyrrole-2,5-dione | ||
HET ID: R3Y | PubChem: 138610287 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: F[C@H]1CNC[C@H]1Oc1c(C)cc(cc1c1ccnc2c1sc(c2)CN1C(=O)CCC1=O)Cl | ||
Standard InChI: InChI=1S/C23H21ClFN3O3S/c1-12-6-13(24)7-16(22(12)31-19-10-26-9-17(19)25)15-4-5-27-18-8-14(32-23(15)18)11-28-20(29)2-3-21(28)30/h4-8,17,19,26H,2-3,9-11H2,1H3/t17-,19+/m0/s1 | ||
Molecular Formula: C23H21ClFN3O3S | Mol. Weight: 473.94754 | Heavy Atoms: 32 |
Charge: 0 | Is Chiral: True | logP: 4.5295 |
HBD: 1 | HBA: 7 | TPSA: 99.77 |
#Bonds: 38 | #Rotatable Bonds: 5 | Shape Complexity: 0.3478261 |
Stereocomplexity: 0.08695652 | Ligand Type: Small Molecule |
Binding Affinity |
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