PDB Entry (6wdw)

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Visualizer: MichelaNGLo

PDB ID: 6wdw Resolution: 2.2 Å Exp. Method: X-RAY DIFFRACTION
PMID: 32659072 DOI: 10.1021/acschembio.0c00362
Protein
Protein Name: Polyamine deacetylase HDAC10
Protein Class: HYDROLASE
Uniprot ID/ACC: F1QCV2 (HDA10_DANRE) Organism: Danio rerio
Gene Symbol: hdac10 Gene ID: 327253
Pocket Descriptors
Volume: 245.952 Depth: 14.4668
Hydrophobicity: 0.721649 Drug Score: 0.346135
Pocket Similarity: Calculate
Ligand
Ligand Name:   4-({3-[2-(dimethylamino)ethyl]-1H-indol-1-yl}methyl)-N-hydroxybenzamide
HET ID:   TWV PubChem:   60164834
DrugBank:   - ChEMBL:   CHEMBL3907295
Canonical SMILES:   ONC(=O)c1ccc(cc1)Cn1cc(c2c1cccc2)CCN(C)C
Standard InChI:   InChI=1S/C20H23N3O2/c1-22(2)12-11-17-14-23(19-6-4-3-5-18(17)19)13-15-7-9-16(10-8-15)20(24)21-25/h3-10,14,25H,11-13H2,1-2H3,(H,21,24)
Molecular Formula:   C20H23N3O2 Mol. Weight:   337.41553 Heavy Atoms:   25
Charge:   0 Is Chiral:   False logP:   3.3036
HBD:   2 HBA:   5 TPSA:   57.5
#Bonds:   27 #Rotatable Bonds:   7 Shape Complexity:   0.25
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
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