PDB Entry (6wdw) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 6wdw | Resolution: 2.2 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 32659072 | DOI: 10.1021/acschembio.0c00362 | |
Protein |
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Protein Name: Polyamine deacetylase HDAC10 | |
Protein Class: HYDROLASE | |
Uniprot ID/ACC: F1QCV2 (HDA10_DANRE) | Organism: Danio rerio |
Gene Symbol: hdac10 | Gene ID: 327253 |
Pocket Descriptors | |
Volume: 245.952 | Depth: 14.4668 |
Hydrophobicity: 0.721649 | Drug Score: 0.346135 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 4-({3-[2-(dimethylamino)ethyl]-1H-indol-1-yl}methyl)-N-hydroxybenzamide | ||
HET ID: TWV | PubChem: 60164834 | |
DrugBank: - | ChEMBL: CHEMBL3907295 | |
Canonical SMILES: ONC(=O)c1ccc(cc1)Cn1cc(c2c1cccc2)CCN(C)C | ||
Standard InChI: InChI=1S/C20H23N3O2/c1-22(2)12-11-17-14-23(19-6-4-3-5-18(17)19)13-15-7-9-16(10-8-15)20(24)21-25/h3-10,14,25H,11-13H2,1-2H3,(H,21,24) | ||
Molecular Formula: C20H23N3O2 | Mol. Weight: 337.41553 | Heavy Atoms: 25 |
Charge: 0 | Is Chiral: False | logP: 3.3036 |
HBD: 2 | HBA: 5 | TPSA: 57.5 |
#Bonds: 27 | #Rotatable Bonds: 7 | Shape Complexity: 0.25 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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