PDB Entry (6pzs)

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Visualizer: MichelaNGLo

PDB ID: 6pzs Resolution: 1.79 Å Exp. Method: X-RAY DIFFRACTION
PMID: 31793776 DOI: 10.1021/acs.jmedchem.9b01540
Protein
Protein Name: Histone deacetylase 6
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: F8W4B7 (F8W4B7_DANRE) Organism: Danio rerio
Gene Symbol: hdac6 Gene ID: 565482
Pocket Descriptors
Volume: 208.128 Depth: 13.0782
Hydrophobicity: 0.686567 Drug Score: 0.352344
Pocket Similarity: Calculate
Ligand
Ligand Name:   4-[({[(1R,2R,5R)-6,6-dimethylbicyclo[3.1.1]heptan-2-yl]methyl}amino)methyl]-N-hydroxybenzamide
HET ID:   P7J PubChem:   145865296
DrugBank:   - ChEMBL:   -
Canonical SMILES:   ONC(=O)c1ccc(cc1)CNC[C@@H]1CC[C@@H]2C[C@H]1C2(C)C
Standard InChI:   InChI=1S/C18H26N2O2/c1-18(2)15-8-7-14(16(18)9-15)11-19-10-12-3-5-13(6-4-12)17(21)20-22/h3-6,14-16,19,22H,7-11H2,1-2H3,(H,20,21)/t14-,15+,16+/m0/s1
Molecular Formula:   C18H26N2O2 Mol. Weight:   302.41125 Heavy Atoms:   22
Charge:   0 Is Chiral:   True logP:   3.7493
HBD:   3 HBA:   4 TPSA:   61.36
#Bonds:   27 #Rotatable Bonds:   6 Shape Complexity:   0.6111111
Stereocomplexity:   0.16666667 Ligand Type:   Small Molecule
Binding Affinity
-