PDB Entry (6pzs) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 6pzs | Resolution: 1.79 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 31793776 | DOI: 10.1021/acs.jmedchem.9b01540 | |
Protein |
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Protein Name: Histone deacetylase 6 | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: F8W4B7 (F8W4B7_DANRE) | Organism: Danio rerio |
Gene Symbol: hdac6 | Gene ID: 565482 |
Pocket Descriptors | |
Volume: 208.128 | Depth: 13.0782 |
Hydrophobicity: 0.686567 | Drug Score: 0.352344 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 4-[({[(1R,2R,5R)-6,6-dimethylbicyclo[3.1.1]heptan-2-yl]methyl}amino)methyl]-N-hydroxybenzamide | ||
HET ID: P7J | PubChem: 145865296 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: ONC(=O)c1ccc(cc1)CNC[C@@H]1CC[C@@H]2C[C@H]1C2(C)C | ||
Standard InChI: InChI=1S/C18H26N2O2/c1-18(2)15-8-7-14(16(18)9-15)11-19-10-12-3-5-13(6-4-12)17(21)20-22/h3-6,14-16,19,22H,7-11H2,1-2H3,(H,20,21)/t14-,15+,16+/m0/s1 | ||
Molecular Formula: C18H26N2O2 | Mol. Weight: 302.41125 | Heavy Atoms: 22 |
Charge: 0 | Is Chiral: True | logP: 3.7493 |
HBD: 3 | HBA: 4 | TPSA: 61.36 |
#Bonds: 27 | #Rotatable Bonds: 6 | Shape Complexity: 0.6111111 |
Stereocomplexity: 0.16666667 | Ligand Type: Small Molecule |
Binding Affinity |
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