PDB Entry (5r58)

Download

Visualizer: MichelaNGLo

PDB ID: 5r58 Resolution: 1.98 Å Exp. Method: X-RAY DIFFRACTION
PMID: - DOI: None
Protein
Protein Name: Uridine diphosphate glucose pyrophosphatase NUDT22
Protein Class: HYDROLASE
Uniprot ID/ACC: Q9BRQ3 (NUD22_HUMAN) Organism: Homo sapiens
Gene Symbol: NUDT22 Gene ID: 84304
Pocket Descriptors
Volume: 457.472 Depth: 16.3707
Hydrophobicity: 0.754545 Drug Score: 0.428921
Pocket Similarity: Calculate
Ligand
Ligand Name:   (3~{R},4~{R})-1,1-bis(oxidanylidene)-4-(pyridin-3-ylmethylamino)thiolan-3-ol
HET ID:   S0S PubChem:   1201335
DrugBank:   - ChEMBL:   -
Canonical SMILES:   O[C@H]1CS(=O)(=O)C[C@@H]1NCc1cccnc1
Standard InChI:   InChI=1S/C10H14N2O3S/c13-10-7-16(14,15)6-9(10)12-5-8-2-1-3-11-4-8/h1-4,9-10,12-13H,5-7H2/t9-,10-/m0/s1
Molecular Formula:   C10H14N2O3S Mol. Weight:   242.29475 Heavy Atoms:   16
Charge:   0 Is Chiral:   True logP:   0.8008
HBD:   2 HBA:   5 TPSA:   87.67
#Bonds:   19 #Rotatable Bonds:   3 Shape Complexity:   0.5
Stereocomplexity:   0.2 Ligand Type:   Small Molecule
Binding Affinity
-