PDB Entry (5r54)

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Visualizer: MichelaNGLo

PDB ID: 5r54 Resolution: 1.79 Å Exp. Method: X-RAY DIFFRACTION
PMID: - DOI: None
Protein
Protein Name: Uridine diphosphate glucose pyrophosphatase NUDT22
Protein Class: HYDROLASE
Uniprot ID/ACC: Q9BRQ3 (NUD22_HUMAN) Organism: Homo sapiens
Gene Symbol: NUDT22 Gene ID: 84304
Pocket Descriptors
Volume: 1006.66 Depth: 26.7283
Hydrophobicity: 0.620853 Drug Score: 0.361045
Pocket Similarity: Calculate
Ligand
Ligand Name:   4-(benzimidazol-1-ylmethyl)benzenecarbonitrile
HET ID:   RYM PubChem:   863558
DrugBank:   - ChEMBL:   -
Canonical SMILES:   N#Cc1ccc(cc1)Cn1cnc2c1cccc2
Standard InChI:   InChI=1S/C15H11N3/c16-9-12-5-7-13(8-6-12)10-18-11-17-14-3-1-2-4-15(14)18/h1-8,11H,10H2
Molecular Formula:   C15H11N3 Mol. Weight:   233.26794 Heavy Atoms:   18
Charge:   0 Is Chiral:   False logP:   2.95628
HBD:   0 HBA:   3 TPSA:   41.61
#Bonds:   20 #Rotatable Bonds:   2 Shape Complexity:   0.071428575
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
-