PDB Entry (6x4d)

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Visualizer: MichelaNGLo

PDB ID: 6x4d Resolution: 2.65 Å Exp. Method: X-RAY DIFFRACTION
PMID: 32643196 DOI: 10.1002/pro.3910
Protein
Protein Name: Gag-Pol polyprotein
Protein Class: VIRAL PROTEIN
Uniprot ID/ACC: P03366 (POL_HV1B1) Organism: Human immunodeficiency virus type 1 group M subtype B
Gene Symbol: - Gene ID: -
Pocket Descriptors
Volume: 691.264 Depth: 36.1777
Hydrophobicity: 0.735294 Drug Score: 0.352985
Pocket Similarity: Calculate
Ligand
Ligand Name:   5-(cyclopropylmethyl)-7-{2-[2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]phenoxy}-8-methylnaphthalene-2-carbonitrile
HET ID:   UO4 PubChem:   129908313
DrugBank:   - ChEMBL:   CHEMBL3985848
Canonical SMILES:   N#Cc1ccc2c(c1)c(C)c(cc2CC1CC1)Oc1ccccc1OCCn1ccc(=O)[nH]c1=O
Standard InChI:   InChI=1S/C28H25N3O4/c1-18-23-15-20(17-29)8-9-22(23)21(14-19-6-7-19)16-26(18)35-25-5-3-2-4-24(25)34-13-12-31-11-10-27(32)30-28(31)33/h2-5,8-11,15-16,19H,6-7,12-14H2,1H3,(H,30,32,33)
Molecular Formula:   C28H25N3O4 Mol. Weight:   467.5158 Heavy Atoms:   35
Charge:   0 Is Chiral:   False logP:   4.69368
HBD:   1 HBA:   6 TPSA:   97.11
#Bonds:   40 #Rotatable Bonds:   8 Shape Complexity:   0.25925925
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
-