PDB Entry (6x4b) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 6x4b | Resolution: 2.5 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 32643196 | DOI: 10.1002/pro.3910 | |
Protein |
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Protein Name: Gag-Pol polyprotein | |
Protein Class: VIRAL PROTEIN | |
Uniprot ID/ACC: P03366 (POL_HV1B1) | Organism: Human immunodeficiency virus type 1 group M subtype B |
Gene Symbol: - | Gene ID: - |
Pocket Descriptors | |
Volume: 798.464 | Depth: 39.504 |
Hydrophobicity: 0.71789 | Drug Score: 0.555768 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 7-{2-[2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]phenoxy}-5-fluoro-8-methylnaphthalene-2-carbonitrile | ||
HET ID: UMY | PubChem: 129907943 | |
DrugBank: - | ChEMBL: CHEMBL3967150 | |
Canonical SMILES: N#Cc1ccc2c(c1)c(C)c(cc2F)Oc1ccccc1OCCn1ccc(=O)[nH]c1=O | ||
Standard InChI: InChI=1S/C24H18FN3O4/c1-15-18-12-16(14-26)6-7-17(18)19(25)13-22(15)32-21-5-3-2-4-20(21)31-11-10-28-9-8-23(29)27-24(28)30/h2-9,12-13H,10-11H2,1H3,(H,27,29,30) | ||
Molecular Formula: C24H18FN3O4 | Mol. Weight: 431.41583 | Heavy Atoms: 32 |
Charge: 0 | Is Chiral: False | logP: 3.88028 |
HBD: 1 | HBA: 6 | TPSA: 97.11 |
#Bonds: 36 | #Rotatable Bonds: 6 | Shape Complexity: 0.13043478 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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