PDB Entry (6cm2)

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Visualizer: MichelaNGLo

PDB ID: 6cm2 Resolution: 2.14 Å Exp. Method: X-RAY DIFFRACTION
PMID: 31375673 DOI: 10.1038/s41467-019-11413-4
Protein
Protein Name: Deoxynucleoside triphosphate triphosphohydrolase SAMHD1
Protein Class: HYDROLASE
Uniprot ID/ACC: Q9Y3Z3 (SAMH1_HUMAN) Organism: Homo sapiens
Gene Symbol: SAMHD1 Gene ID: 25939
Pocket Descriptors
Volume: 1096.7 Depth: 61.7389
Hydrophobicity: 0.674447 Drug Score: 0.998979
Pocket Similarity: Calculate
Ligand
Ligand Name:   6-amino-3-{2-deoxy-5-O-[(R)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-beta-D-erythro-pentofuranosyl}-3,4-dihydro-1,3,5-triazin-2(1H)-one
HET ID:   F6G PubChem:   138753197
DrugBank:   - ChEMBL:   -
Canonical SMILES:   O[C@H]1C[C@@H](O[C@@H]1CO[P@](=O)(O[P@](=O)(OP(=O)(O)O)O)O)N1CN=C(NC1=O)N
Standard InChI:   InChI=1S/C8H17N4O13P3/c9-7-10-3-12(8(14)11-7)6-1-4(13)5(23-6)2-22-27(18,19)25-28(20,21)24-26(15,16)17/h4-6,13H,1-3H2,(H,18,19)(H,20,21)(H2,15,16,17)(H3,9,10,11,14)/t4-,5+,6+/m0/s1
Molecular Formula:   C8H17N4O13P3 Mol. Weight:   470.16086 Heavy Atoms:   28
Charge:   0 Is Chiral:   True logP:   -1.4944
HBD:   7 HBA:   17 TPSA:   289.43
#Bonds:   32 #Rotatable Bonds:   8 Shape Complexity:   0.75
Stereocomplexity:   0.625 Ligand Type:   Small Molecule
Binding Affinity
-