PDB Entry (6tw0) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 6tw0 | Resolution: 2.5 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 32045236 | DOI: 10.1021/acs.jmedchem.9b01611 | |
Protein |
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Protein Name: 5'-nucleotidase | |
Protein Class: TRANSFERASE | |
Uniprot ID/ACC: P21589 (5NTD_HUMAN) | Organism: Homo sapiens |
Gene Symbol: NT5E | Gene ID: 4907 |
Pocket Descriptors | |
Volume: 1276.61 | Depth: 28.7184 |
Hydrophobicity: 0.661972 | Drug Score: 0.535063 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: [[(2~{R},3~{S},4~{R},5~{R})-5-(6-azanyl-2-oxidanylidene-3~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]methylphosphonic acid | ||
HET ID: NYZ | PubChem: 145925612 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: O[C@@H]1[C@@H](CO[P@@](=O)(CP(=O)(O)O)O)O[C@H]([C@@H]1O)n1cnc2c1[nH]c(=O)nc2N | ||
Standard InChI: InChI=1S/C11H17N5O10P2/c12-8-5-9(15-11(19)14-8)16(2-13-5)10-7(18)6(17)4(26-10)1-25-28(23,24)3-27(20,21)22/h2,4,6-7,10,17-18H,1,3H2,(H,23,24)(H2,20,21,22)(H3,12,14,15,19)/t4-,6-,7-,10-/m1/s1 | ||
Molecular Formula: C11H17N5O10P2 | Mol. Weight: 441.2277 | Heavy Atoms: 28 |
Charge: 0 | Is Chiral: True | logP: -1.7606 |
HBD: 7 | HBA: 14 | TPSA: 262.96 |
#Bonds: 35 | #Rotatable Bonds: 6 | Shape Complexity: 0.54545456 |
Stereocomplexity: 0.45454547 | Ligand Type: Small Molecule |
Binding Affinity |
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