PDB Entry (6tw0)

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Visualizer: MichelaNGLo

PDB ID: 6tw0 Resolution: 2.5 Å Exp. Method: X-RAY DIFFRACTION
PMID: 32045236 DOI: 10.1021/acs.jmedchem.9b01611
Protein
Protein Name: 5'-nucleotidase
Protein Class: TRANSFERASE
Uniprot ID/ACC: P21589 (5NTD_HUMAN) Organism: Homo sapiens
Gene Symbol: NT5E Gene ID: 4907
Pocket Descriptors
Volume: 1276.61 Depth: 28.7184
Hydrophobicity: 0.661972 Drug Score: 0.535063
Pocket Similarity: Calculate
Ligand
Ligand Name:   [[(2~{R},3~{S},4~{R},5~{R})-5-(6-azanyl-2-oxidanylidene-3~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]methylphosphonic acid
HET ID:   NYZ PubChem:   145925612
DrugBank:   - ChEMBL:   -
Canonical SMILES:   O[C@@H]1[C@@H](CO[P@@](=O)(CP(=O)(O)O)O)O[C@H]([C@@H]1O)n1cnc2c1[nH]c(=O)nc2N
Standard InChI:   InChI=1S/C11H17N5O10P2/c12-8-5-9(15-11(19)14-8)16(2-13-5)10-7(18)6(17)4(26-10)1-25-28(23,24)3-27(20,21)22/h2,4,6-7,10,17-18H,1,3H2,(H,23,24)(H2,20,21,22)(H3,12,14,15,19)/t4-,6-,7-,10-/m1/s1
Molecular Formula:   C11H17N5O10P2 Mol. Weight:   441.2277 Heavy Atoms:   28
Charge:   0 Is Chiral:   True logP:   -1.7606
HBD:   7 HBA:   14 TPSA:   262.96
#Bonds:   35 #Rotatable Bonds:   6 Shape Complexity:   0.54545456
Stereocomplexity:   0.45454547 Ligand Type:   Small Molecule
Binding Affinity
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