PDB Entry (6jqo)

Download

Visualizer: MichelaNGLo

PDB ID: 6jqo Resolution: 3.1 Å Exp. Method: X-RAY DIFFRACTION
PMID: 31511507 DOI: 10.1038/s41467-019-11931-1
Protein
Protein Name: Bifunctional protein PaaZ
Protein Class: HYDROLASE
Uniprot ID/ACC: P77455 (PAAZ_ECOLI) Organism: Escherichia coli
Gene Symbol: - Gene ID: 945954
Pocket Descriptors
Volume: 63.168 Depth: 19.4441
Hydrophobicity: 0.696296 Drug Score: 0.00457414
Pocket Similarity: Calculate
Ligand
Ligand Name:   CROTONYL COENZYME A
HET ID:   COO PubChem:   137349110, 92856
DrugBank:   - ChEMBL:   -
Canonical SMILES:   CC=CC(=O)SCCNC(=O)CCNC(=O)C(C(C)(C)COP(=O)(O)OP(=O)(O)OCC1C(C(C(O1)N2C=NC3=C(N=CN=C32)N)O)OP(=O)(O)O)O
Standard InChI:   InChI=1S/C25H40N7O17P3S/c1-4-5-16(34)53-9-8-27-15(33)6-7-28-23(37)20(36)25(2,3)11-46-52(43,44)49-51(41,42)45-10-14-19(48-50(38,39)40)18(35)24(47-14)32-13-31-17-21(26)29-12-30-22(17)32/h4-5,12-14,18-20,24,35-36H,6-11H2,1-3H3,(H,27,33)(H,28,37)(H,41,42)(H,43,44)(H2,26,29,30)(H2,38,39,40)
Molecular Formula:   C25H40N7O17P3S Mol. Weight:   835.6081 Heavy Atoms:   53
Charge:   0 Is Chiral:   True logP:   0.6038
HBD:   9 HBA:   25 TPSA:   418.36
#Bonds:   55 #Rotatable Bonds:   23 Shape Complexity:   0.6
Stereocomplexity:   0.28 Ligand Type:   Small Molecule
Binding Affinity
-