PDB Entry (6uml)

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Visualizer: MichelaNGLo

PDB ID: 6uml Resolution: 3.58 Å Exp. Method: X-RAY DIFFRACTION
PMID: 32251415 DOI: 10.1038/s41594-020-0405-9
Protein
Protein Name: Protein cereblon
Protein Class: LIGASE
Uniprot ID/ACC: Q96SW2 (CRBN_HUMAN) Organism: Homo sapiens
Gene Symbol: CRBN Gene ID: 51185
Pocket Descriptors
Volume: 309.44 Depth: 35.0668
Hydrophobicity: 0.684814 Drug Score: 0.00438602
Pocket Similarity: Calculate
Ligand
Ligand Name:   S-Pomalidomide
HET ID:   Y70 PubChem:   9965330
DrugBank:   - ChEMBL:   CHEMBL2093113
Canonical SMILES:   O=C1CC[C@@H](C(=O)N1)N1C(=O)c2c(C1=O)c(N)ccc2
Standard InChI:   InChI=1S/C13H11N3O4/c14-7-3-1-2-6-10(7)13(20)16(12(6)19)8-4-5-9(17)15-11(8)18/h1-3,8H,4-5,14H2,(H,15,17,18)/t8-/m0/s1
Molecular Formula:   C13H11N3O4 Mol. Weight:   273.24414 Heavy Atoms:   20
Charge:   0 Is Chiral:   True logP:   0.5179
HBD:   2 HBA:   7 TPSA:   109.57
#Bonds:   23 #Rotatable Bonds:   1 Shape Complexity:   0.23076923
Stereocomplexity:   0.07692308 Ligand Type:   Small Molecule
Binding Affinity
-