PDB Entry (6uml) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 6uml | Resolution: 3.58 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 32251415 | DOI: 10.1038/s41594-020-0405-9 | |
Protein |
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Protein Name: Protein cereblon | |
Protein Class: LIGASE | |
Uniprot ID/ACC: Q96SW2 (CRBN_HUMAN) | Organism: Homo sapiens |
Gene Symbol: CRBN | Gene ID: 51185 |
Pocket Descriptors | |
Volume: 309.44 | Depth: 35.0668 |
Hydrophobicity: 0.684814 | Drug Score: 0.00438602 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: S-Pomalidomide | ||
HET ID: Y70 | PubChem: 9965330 | |
DrugBank: - | ChEMBL: CHEMBL2093113 | |
Canonical SMILES: O=C1CC[C@@H](C(=O)N1)N1C(=O)c2c(C1=O)c(N)ccc2 | ||
Standard InChI: InChI=1S/C13H11N3O4/c14-7-3-1-2-6-10(7)13(20)16(12(6)19)8-4-5-9(17)15-11(8)18/h1-3,8H,4-5,14H2,(H,15,17,18)/t8-/m0/s1 | ||
Molecular Formula: C13H11N3O4 | Mol. Weight: 273.24414 | Heavy Atoms: 20 |
Charge: 0 | Is Chiral: True | logP: 0.5179 |
HBD: 2 | HBA: 7 | TPSA: 109.57 |
#Bonds: 23 | #Rotatable Bonds: 1 | Shape Complexity: 0.23076923 |
Stereocomplexity: 0.07692308 | Ligand Type: Small Molecule |
Binding Affinity |
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