PDB Entry (6us3)

Download

Visualizer: MichelaNGLo

PDB ID: 6us3 Resolution: 1.47 Å Exp. Method: X-RAY DIFFRACTION
PMID: 32184970 DOI: 10.1021/acsmedchemlett.9b00420
Protein
Protein Name: 7,8-dihydro-8-oxoguanine triphosphatase
Protein Class: HYDROLASE
Uniprot ID/ACC: P36639 (8ODP_HUMAN) Organism: Homo sapiens
Gene Symbol: NUDT1 Gene ID: 4521
Pocket Descriptors
Volume: 569.536 Depth: 11.8254
Hydrophobicity: 0.75 Drug Score: 0.913183
Pocket Similarity: Calculate
Ligand
Ligand Name:   N-[5-(2,3-dimethylphenyl)-1,6-naphthyridin-7-yl]acetamide
HET ID:   8JF PubChem:   146014962
DrugBank:   - ChEMBL:   -
Canonical SMILES:   CC(=O)Nc1cc2ncccc2c(n1)c1cccc(c1C)C
Standard InChI:   InChI=1S/C18H17N3O/c1-11-6-4-7-14(12(11)2)18-15-8-5-9-19-16(15)10-17(21-18)20-13(3)22/h4-10H,1-3H3,(H,20,21,22)
Molecular Formula:   C18H17N3O Mol. Weight:   291.34708 Heavy Atoms:   22
Charge:   0 Is Chiral:   False logP:   3.945
HBD:   1 HBA:   4 TPSA:   54.88
#Bonds:   24 #Rotatable Bonds:   3 Shape Complexity:   0.16666667
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
-