PDB Entry (6us3) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 6us3 | Resolution: 1.47 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 32184970 | DOI: 10.1021/acsmedchemlett.9b00420 | |
Protein |
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Protein Name: 7,8-dihydro-8-oxoguanine triphosphatase | |
Protein Class: HYDROLASE | |
Uniprot ID/ACC: P36639 (8ODP_HUMAN) | Organism: Homo sapiens |
Gene Symbol: NUDT1 | Gene ID: 4521 |
Pocket Descriptors | |
Volume: 569.536 | Depth: 11.8254 |
Hydrophobicity: 0.75 | Drug Score: 0.913183 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: N-[5-(2,3-dimethylphenyl)-1,6-naphthyridin-7-yl]acetamide | ||
HET ID: 8JF | PubChem: 146014962 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: CC(=O)Nc1cc2ncccc2c(n1)c1cccc(c1C)C | ||
Standard InChI: InChI=1S/C18H17N3O/c1-11-6-4-7-14(12(11)2)18-15-8-5-9-19-16(15)10-17(21-18)20-13(3)22/h4-10H,1-3H3,(H,20,21,22) | ||
Molecular Formula: C18H17N3O | Mol. Weight: 291.34708 | Heavy Atoms: 22 |
Charge: 0 | Is Chiral: False | logP: 3.945 |
HBD: 1 | HBA: 4 | TPSA: 54.88 |
#Bonds: 24 | #Rotatable Bonds: 3 | Shape Complexity: 0.16666667 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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