PDB Entry (6sz7)

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Visualizer: MichelaNGLo

PDB ID: 6sz7 Resolution: 2.31 Å Exp. Method: X-RAY DIFFRACTION
PMID: 32101404 DOI: 10.1021/acschembio.9b00894
Protein
Protein Name: YTH domain-containing protein 1
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: Q96MU7 (YTDC1_HUMAN) Organism: Homo sapiens
Gene Symbol: YTHDC1 Gene ID: 91746
Pocket Descriptors
Volume: 622.912 Depth: 22.4428
Hydrophobicity: 0.706767 Drug Score: 0.5
Pocket Similarity: Calculate
Ligand
Ligand Name:   5,6,7,8-tetrahydro-4~{a}~{H}-quinazoline-2,4-dione
HET ID:   M1Q PubChem:   146018692
DrugBank:   - ChEMBL:   -
Canonical SMILES:   O=C1NC(=O)N=C2C1CCCC2
Standard InChI:   InChI=1S/C8H10N2O2/c11-7-5-3-1-2-4-6(5)9-8(12)10-7/h5H,1-4H2,(H,10,11,12)
Molecular Formula:   C8H10N2O2 Mol. Weight:   166.1772 Heavy Atoms:   12
Charge:   0 Is Chiral:   True logP:   0.6318
HBD:   1 HBA:   4 TPSA:   58.53
#Bonds:   13 #Rotatable Bonds:   0 Shape Complexity:   0.625
Stereocomplexity:   0.125 Ligand Type:   Small Molecule
Binding Affinity
-