PDB Entry (6sz7) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 6sz7 | Resolution: 2.31 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 32101404 | DOI: 10.1021/acschembio.9b00894 | |
Protein |
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Protein Name: YTH domain-containing protein 1 | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: Q96MU7 (YTDC1_HUMAN) | Organism: Homo sapiens |
Gene Symbol: YTHDC1 | Gene ID: 91746 |
Pocket Descriptors | |
Volume: 622.912 | Depth: 22.4428 |
Hydrophobicity: 0.706767 | Drug Score: 0.5 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 5,6,7,8-tetrahydro-4~{a}~{H}-quinazoline-2,4-dione | ||
HET ID: M1Q | PubChem: 146018692 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: O=C1NC(=O)N=C2C1CCCC2 | ||
Standard InChI: InChI=1S/C8H10N2O2/c11-7-5-3-1-2-4-6(5)9-8(12)10-7/h5H,1-4H2,(H,10,11,12) | ||
Molecular Formula: C8H10N2O2 | Mol. Weight: 166.1772 | Heavy Atoms: 12 |
Charge: 0 | Is Chiral: True | logP: 0.6318 |
HBD: 1 | HBA: 4 | TPSA: 58.53 |
#Bonds: 13 | #Rotatable Bonds: 0 | Shape Complexity: 0.625 |
Stereocomplexity: 0.125 | Ligand Type: Small Molecule |
Binding Affinity |
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