PDB Entry (6us2)

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Visualizer: MichelaNGLo

PDB ID: 6us2 Resolution: 1.8 Å Exp. Method: X-RAY DIFFRACTION
PMID: 32184970 DOI: 10.1021/acsmedchemlett.9b00420
Protein
Protein Name: 7,8-dihydro-8-oxoguanine triphosphatase
Protein Class: HYDROLASE
Uniprot ID/ACC: P36639 (8ODP_HUMAN) Organism: Homo sapiens
Gene Symbol: NUDT1 Gene ID: 4521
Pocket Descriptors
Volume: 692.928 Depth: 22.4642
Hydrophobicity: 0.764706 Drug Score: 0.752043
Pocket Similarity: Calculate
Ligand
Ligand Name:   N-[5-(2,3-dimethylphenyl)-1,2,3,4-tetrahydro-1,6-naphthyridin-7-yl]acetamide
HET ID:   S3O PubChem:   146018719
DrugBank:   - ChEMBL:   -
Canonical SMILES:   CC(=O)Nc1cc2NCCCc2c(n1)c1cccc(c1C)C
Standard InChI:   InChI=1S/C18H21N3O/c1-11-6-4-7-14(12(11)2)18-15-8-5-9-19-16(15)10-17(21-18)20-13(3)22/h4,6-7,10,19H,5,8-9H2,1-3H3,(H,20,21,22)
Molecular Formula:   C18H21N3O Mol. Weight:   295.37885 Heavy Atoms:   22
Charge:   0 Is Chiral:   False logP:   3.8929
HBD:   2 HBA:   4 TPSA:   54.02
#Bonds:   24 #Rotatable Bonds:   3 Shape Complexity:   0.33333334
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
-