PDB Entry (6m6y)

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Visualizer: MichelaNGLo

PDB ID: 6m6y Resolution: 1.5 Å Exp. Method: X-RAY DIFFRACTION
PMID: 33021500 DOI: 10.1107/S2059798320010992
Protein
Protein Name: 8-oxo-(d)GTP phosphatase
Protein Class: TRANSFERASE
Uniprot ID/ACC: A0QUZ2 (MUTT1_MYCS2) Organism: Mycolicibacterium smegmatis
Gene Symbol: - Gene ID: 45743943
Pocket Descriptors
Volume: 608.192 Depth: 23.2689
Hydrophobicity: 0.691729 Drug Score: 0.332111
Pocket Similarity: Calculate
Ligand
Ligand Name:   8-OXO-2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE
HET ID:   8DG PubChem:   135398565
DrugBank:   - ChEMBL:   CHEMBL1230621
Canonical SMILES:   O[C@H]1C[C@@H](O[C@@H]1CO[P@](=O)(O[P@](=O)(OP(=O)(O)O)O)O)n1c(=O)[nH]c2c1nc(N)[nH]c2=O
Standard InChI:   InChI=1S/C10H16N5O14P3/c11-9-13-7-6(8(17)14-9)12-10(18)15(7)5-1-3(16)4(27-5)2-26-31(22,23)29-32(24,25)28-30(19,20)21/h3-5,16H,1-2H2,(H,12,18)(H,22,23)(H,24,25)(H2,19,20,21)(H3,11,13,14,17)/t3-,4+,5+/m0/s1
Molecular Formula:   C10H16N5O14P3 Mol. Weight:   523.1804 Heavy Atoms:   32
Charge:   0 Is Chiral:   True logP:   -1.432
HBD:   8 HBA:   17 TPSA:   328.27
#Bonds:   39 #Rotatable Bonds:   8 Shape Complexity:   0.5
Stereocomplexity:   0.5 Ligand Type:   Small Molecule
Binding Affinity
-