PDB Entry (6sz8) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 6sz8 | Resolution: 1.47 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 32101404 | DOI: 10.1021/acschembio.9b00894 | |
Protein |
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Protein Name: YTH domain-containing protein 1 | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: Q96MU7 (YTDC1_HUMAN) | Organism: Homo sapiens |
Gene Symbol: YTHDC1 | Gene ID: 91746 |
Pocket Descriptors | |
Volume: 632.704 | Depth: 22.698 |
Hydrophobicity: 0.717791 | Drug Score: 0.425236 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 6-pyrrolidin-1-yl-5~{H}-pyrimidine-2,4-dione | ||
HET ID: M1Z | PubChem: 146018693 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: O=C1NC(=O)N=C(C1)N1CCCC1 | ||
Standard InChI: InChI=1S/C8H11N3O2/c12-7-5-6(9-8(13)10-7)11-3-1-2-4-11/h1-5H2,(H,10,12,13) | ||
Molecular Formula: C8H11N3O2 | Mol. Weight: 181.19183 | Heavy Atoms: 13 |
Charge: 0 | Is Chiral: False | logP: -0.1771 |
HBD: 1 | HBA: 5 | TPSA: 61.77 |
#Bonds: 14 | #Rotatable Bonds: 1 | Shape Complexity: 0.625 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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