PDB Entry (6sz8)

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Visualizer: MichelaNGLo

PDB ID: 6sz8 Resolution: 1.47 Å Exp. Method: X-RAY DIFFRACTION
PMID: 32101404 DOI: 10.1021/acschembio.9b00894
Protein
Protein Name: YTH domain-containing protein 1
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: Q96MU7 (YTDC1_HUMAN) Organism: Homo sapiens
Gene Symbol: YTHDC1 Gene ID: 91746
Pocket Descriptors
Volume: 632.704 Depth: 22.698
Hydrophobicity: 0.717791 Drug Score: 0.425236
Pocket Similarity: Calculate
Ligand
Ligand Name:   6-pyrrolidin-1-yl-5~{H}-pyrimidine-2,4-dione
HET ID:   M1Z PubChem:   146018693
DrugBank:   - ChEMBL:   -
Canonical SMILES:   O=C1NC(=O)N=C(C1)N1CCCC1
Standard InChI:   InChI=1S/C8H11N3O2/c12-7-5-6(9-8(13)10-7)11-3-1-2-4-11/h1-5H2,(H,10,12,13)
Molecular Formula:   C8H11N3O2 Mol. Weight:   181.19183 Heavy Atoms:   13
Charge:   0 Is Chiral:   False logP:   -0.1771
HBD:   1 HBA:   5 TPSA:   61.77
#Bonds:   14 #Rotatable Bonds:   1 Shape Complexity:   0.625
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
-