PDB Entry (6y1z) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 6y1z | Resolution: 2.82 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 32726573 | DOI: 10.1016/j.str.2020.07.004 | |
Protein |
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Protein Name: 5-hydroxytryptamine receptor 3A | |
Protein Class: SIGNALING PROTEIN | |
Uniprot ID/ACC: P23979 (5HT3A_MOUSE) | Organism: Mus musculus |
Gene Symbol: Htr3a | Gene ID: 15561 |
Pocket Descriptors | |
Volume: 105.088 | Depth: 16.6455 |
Hydrophobicity: 0.767857 | Drug Score: 0.115758 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: (3~{a}~{S})-2-[(3~{S})-1-azabicyclo[2.2.2]octan-3-yl]-3~{a},4,5,6-tetrahydro-3~{H}-benzo[de]isoquinolin-1-one | ||
HET ID: O7B | PubChem: 6337614 | |
DrugBank: DB00377 | ChEMBL: CHEMBL1189679 | |
Canonical SMILES: O=C1N(C[C@@H]2c3c1cccc3CCC2)[C@@H]1CN2CCC1CC2 | ||
Standard InChI: InChI=1S/C19H24N2O/c22-19-16-6-2-4-14-3-1-5-15(18(14)16)11-21(19)17-12-20-9-7-13(17)8-10-20/h2,4,6,13,15,17H,1,3,5,7-12H2/t15-,17-/m1/s1 | ||
Molecular Formula: C19H24N2O | Mol. Weight: 296.40665 | Heavy Atoms: 22 |
Charge: 0 | Is Chiral: True | logP: 2.5323 |
HBD: 0 | HBA: 3 | TPSA: 23.55 |
#Bonds: 28 | #Rotatable Bonds: 1 | Shape Complexity: 0.6315789 |
Stereocomplexity: 0.21052632 | Ligand Type: Small Molecule |
Binding Affinity |
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Database Name | Value |
BindingDB | Kd : 0.3199999928474426 nM, Kd : 0.18000000715255737 nM, Ki : 0.029999999329447746 nM, Ki : 0.03999999910593033 nM, IC50 : 0.8299999833106995 nM, IC50 : 0.8799999952316284 nM |