PDB Entry (6szt) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 6szt | Resolution: 1.5 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 32101404 | DOI: 10.1021/acschembio.9b00894 | |
Protein |
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Protein Name: YTH domain-containing protein 1 | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: Q96MU7 (YTDC1_HUMAN) | Organism: Homo sapiens |
Gene Symbol: YTHDC1 | Gene ID: 91746 |
Pocket Descriptors | |
Volume: 433.92 | Depth: 16.03 |
Hydrophobicity: 0.733333 | Drug Score: 0.470203 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 6-[[methyl(thiophen-3-ylmethyl)amino]methyl]-5~{H}-pyrimidine-2,4-dione | ||
HET ID: M4Q | PubChem: 146018696 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: O=C1CC(=NC(=O)N1)CN(Cc1ccsc1)C | ||
Standard InChI: InChI=1S/C11H13N3O2S/c1-14(5-8-2-3-17-7-8)6-9-4-10(15)13-11(16)12-9/h2-3,7H,4-6H2,1H3,(H,13,15,16) | ||
Molecular Formula: C11H13N3O2S | Mol. Weight: 251.30482 | Heavy Atoms: 17 |
Charge: 0 | Is Chiral: False | logP: 1.0252 |
HBD: 1 | HBA: 6 | TPSA: 90.01 |
#Bonds: 18 | #Rotatable Bonds: 4 | Shape Complexity: 0.36363637 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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