PDB Entry (6szt)

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Visualizer: MichelaNGLo

PDB ID: 6szt Resolution: 1.5 Å Exp. Method: X-RAY DIFFRACTION
PMID: 32101404 DOI: 10.1021/acschembio.9b00894
Protein
Protein Name: YTH domain-containing protein 1
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: Q96MU7 (YTDC1_HUMAN) Organism: Homo sapiens
Gene Symbol: YTHDC1 Gene ID: 91746
Pocket Descriptors
Volume: 433.92 Depth: 16.03
Hydrophobicity: 0.733333 Drug Score: 0.470203
Pocket Similarity: Calculate
Ligand
Ligand Name:   6-[[methyl(thiophen-3-ylmethyl)amino]methyl]-5~{H}-pyrimidine-2,4-dione
HET ID:   M4Q PubChem:   146018696
DrugBank:   - ChEMBL:   -
Canonical SMILES:   O=C1CC(=NC(=O)N1)CN(Cc1ccsc1)C
Standard InChI:   InChI=1S/C11H13N3O2S/c1-14(5-8-2-3-17-7-8)6-9-4-10(15)13-11(16)12-9/h2-3,7H,4-6H2,1H3,(H,13,15,16)
Molecular Formula:   C11H13N3O2S Mol. Weight:   251.30482 Heavy Atoms:   17
Charge:   0 Is Chiral:   False logP:   1.0252
HBD:   1 HBA:   6 TPSA:   90.01
#Bonds:   18 #Rotatable Bonds:   4 Shape Complexity:   0.36363637
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
-