PDB Entry (6t04)

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Visualizer: MichelaNGLo

PDB ID: 6t04 Resolution: 1.5 Å Exp. Method: X-RAY DIFFRACTION
PMID: 32101404 DOI: 10.1021/acschembio.9b00894
Protein
Protein Name: YTH domain-containing protein 1
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: Q96MU7 (YTDC1_HUMAN) Organism: Homo sapiens
Gene Symbol: YTHDC1 Gene ID: 91746
Pocket Descriptors
Volume: 503.424 Depth: 16.439
Hydrophobicity: 0.738806 Drug Score: 0.5
Pocket Similarity: Calculate
Ligand
Ligand Name:   2-phenyl-4,5-dihydro-1~{H}-imidazole
HET ID:   M3H PubChem:   13639
DrugBank:   - ChEMBL:   CHEMBL274548
Canonical SMILES:   c1ccc(cc1)C1=NCCN1
Standard InChI:   InChI=1S/C9H10N2/c1-2-4-8(5-3-1)9-10-6-7-11-9/h1-5H,6-7H2,(H,10,11)
Molecular Formula:   C9H10N2 Mol. Weight:   146.1891 Heavy Atoms:   11
Charge:   0 Is Chiral:   False logP:   0.8008
HBD:   1 HBA:   2 TPSA:   24.39
#Bonds:   12 #Rotatable Bonds:   1 Shape Complexity:   0.22222222
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
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