PDB Entry (6ynl) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 6ynl | Resolution: 1.5 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: - | DOI: None | |
Protein |
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Protein Name: YTH domain-containing protein 1 | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: Q96MU7 (YTDC1_HUMAN) | Organism: Homo sapiens |
Gene Symbol: YTHDC1 | Gene ID: 91746 |
Pocket Descriptors | |
Volume: 884.992 | Depth: 22.0581 |
Hydrophobicity: 0.709845 | Drug Score: 0.688676 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 3-[(2~{R})-5,5-dimethyl-2-phenyl-morpholin-4-yl]-~{N}-(methylcarbamoyl)propanamide | ||
HET ID: P0Z | PubChem: 36689627 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: CC1(C)NC[C@H](OC1)c1ccccc1 | ||
Standard InChI: InChI=1S/C12H17NO/c1-12(2)9-14-11(8-13-12)10-6-4-3-5-7-10/h3-7,11,13H,8-9H2,1-2H3/t11-/m0/s1 | ||
Molecular Formula: C12H17NO | Mol. Weight: 191.26949 | Heavy Atoms: 14 |
Charge: 0 | Is Chiral: True | logP: 2.4549 |
HBD: 1 | HBA: 2 | TPSA: 21.26 |
#Bonds: 16 | #Rotatable Bonds: 1 | Shape Complexity: 0.5 |
Stereocomplexity: 0.083333336 | Ligand Type: Small Molecule |
Binding Affinity |
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