PDB Entry (6yki) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 6yki | Resolution: 1.3 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: - | DOI: None | |
Protein |
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Protein Name: YTH domain-containing protein 1 | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: Q96MU7 (YTDC1_HUMAN) | Organism: Homo sapiens |
Gene Symbol: YTHDC1 | Gene ID: 91746 |
Pocket Descriptors | |
Volume: 551.232 | Depth: 16.1889 |
Hydrophobicity: 0.731034 | Drug Score: 0.654614 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: ~{N}-ethyl-2-[(2~{S},5~{R})-5-methyl-2-phenyl-morpholin-4-yl]ethanamine | ||
HET ID: OUZ | PubChem: 146675163 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: CCNCCN1CC(OCC1C)C2=CC=CC=C2 | ||
Standard InChI: InChI=1S/C15H24N2O/c1-3-16-9-10-17-11-15(18-12-13(17)2)14-7-5-4-6-8-14/h4-8,13,15-16H,3,9-12H2,1-2H3 | ||
Molecular Formula: C15H24N2O | Mol. Weight: 248.36386 | Heavy Atoms: 18 |
Charge: 0 | Is Chiral: True | logP: 2.3867 |
HBD: 1 | HBA: 3 | TPSA: 24.5 |
#Bonds: 19 | #Rotatable Bonds: 5 | Shape Complexity: 0.6 |
Stereocomplexity: 0.13333334 | Ligand Type: Small Molecule |
Binding Affinity |
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