PDB Entry (6yki)

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Visualizer: MichelaNGLo

PDB ID: 6yki Resolution: 1.3 Å Exp. Method: X-RAY DIFFRACTION
PMID: - DOI: None
Protein
Protein Name: YTH domain-containing protein 1
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: Q96MU7 (YTDC1_HUMAN) Organism: Homo sapiens
Gene Symbol: YTHDC1 Gene ID: 91746
Pocket Descriptors
Volume: 551.232 Depth: 16.1889
Hydrophobicity: 0.731034 Drug Score: 0.654614
Pocket Similarity: Calculate
Ligand
Ligand Name:   ~{N}-ethyl-2-[(2~{S},5~{R})-5-methyl-2-phenyl-morpholin-4-yl]ethanamine
HET ID:   OUZ PubChem:   146675163
DrugBank:   - ChEMBL:   -
Canonical SMILES:   CCNCCN1CC(OCC1C)C2=CC=CC=C2
Standard InChI:   InChI=1S/C15H24N2O/c1-3-16-9-10-17-11-15(18-12-13(17)2)14-7-5-4-6-8-14/h4-8,13,15-16H,3,9-12H2,1-2H3
Molecular Formula:   C15H24N2O Mol. Weight:   248.36386 Heavy Atoms:   18
Charge:   0 Is Chiral:   True logP:   2.3867
HBD:   1 HBA:   3 TPSA:   24.5
#Bonds:   19 #Rotatable Bonds:   5 Shape Complexity:   0.6
Stereocomplexity:   0.13333334 Ligand Type:   Small Molecule
Binding Affinity
-