PDB Entry (6t07) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 6t07 | Resolution: 1.5 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 32101404 | DOI: 10.1021/acschembio.9b00894 | |
Protein |
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Protein Name: YTH domain-containing protein 1 | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: Q96MU7 (YTDC1_HUMAN) | Organism: Homo sapiens |
Gene Symbol: YTHDC1 | Gene ID: 91746 |
Pocket Descriptors | |
Volume: 489.216 | Depth: 16.7666 |
Hydrophobicity: 0.716535 | Drug Score: 0.547673 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: ~{N}-[(2~{S})-pyrrolidin-2-yl]-1~{H}-1,2,4-triazol-5-amine | ||
HET ID: M45 | PubChem: 145994375 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: C1CN[C@H](C1)Nc1ncn[nH]1 | ||
Standard InChI: InChI=1S/C6H11N5/c1-2-5(7-3-1)10-6-8-4-9-11-6/h4-5,7H,1-3H2,(H2,8,9,10,11)/t5-/m0/s1 | ||
Molecular Formula: C6H11N5 | Mol. Weight: 153.18504 | Heavy Atoms: 11 |
Charge: 0 | Is Chiral: True | logP: 0.3279 |
HBD: 3 | HBA: 4 | TPSA: 65.63 |
#Bonds: 14 | #Rotatable Bonds: 2 | Shape Complexity: 0.6666667 |
Stereocomplexity: 0.16666667 | Ligand Type: Small Molecule |
Binding Affinity |
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