PDB Entry (6t07)

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Visualizer: MichelaNGLo

PDB ID: 6t07 Resolution: 1.5 Å Exp. Method: X-RAY DIFFRACTION
PMID: 32101404 DOI: 10.1021/acschembio.9b00894
Protein
Protein Name: YTH domain-containing protein 1
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: Q96MU7 (YTDC1_HUMAN) Organism: Homo sapiens
Gene Symbol: YTHDC1 Gene ID: 91746
Pocket Descriptors
Volume: 489.216 Depth: 16.7666
Hydrophobicity: 0.716535 Drug Score: 0.547673
Pocket Similarity: Calculate
Ligand
Ligand Name:   ~{N}-[(2~{S})-pyrrolidin-2-yl]-1~{H}-1,2,4-triazol-5-amine
HET ID:   M45 PubChem:   145994375
DrugBank:   - ChEMBL:   -
Canonical SMILES:   C1CN[C@H](C1)Nc1ncn[nH]1
Standard InChI:   InChI=1S/C6H11N5/c1-2-5(7-3-1)10-6-8-4-9-11-6/h4-5,7H,1-3H2,(H2,8,9,10,11)/t5-/m0/s1
Molecular Formula:   C6H11N5 Mol. Weight:   153.18504 Heavy Atoms:   11
Charge:   0 Is Chiral:   True logP:   0.3279
HBD:   3 HBA:   4 TPSA:   65.63
#Bonds:   14 #Rotatable Bonds:   2 Shape Complexity:   0.6666667
Stereocomplexity:   0.16666667 Ligand Type:   Small Molecule
Binding Affinity
-