PDB Entry (6zcm)

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Visualizer: MichelaNGLo

PDB ID: 6zcm Resolution: 1.24 Å Exp. Method: X-RAY DIFFRACTION
PMID: - DOI: None
Protein
Protein Name: YTH domain-containing protein 1
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: Q96MU7 (YTDC1_HUMAN) Organism: Homo sapiens
Gene Symbol: YTHDC1 Gene ID: 91746
Pocket Descriptors
Volume: 313.536 Depth: 11.0954
Hydrophobicity: 0.701299 Drug Score: 0.5
Pocket Similarity: Calculate
Ligand
Ligand Name:   6-[[cyclopropyl-[(7-methoxy-1,3-benzodioxol-5-yl)methyl]amino]methyl]-1~{H}-pyrimidine-2,4-dione
HET ID:   QF2 PubChem:   47057537
DrugBank:   - ChEMBL:   -
Canonical SMILES:   COc1cc(CN(C2CC2)Cc2cc(=O)[nH]c(=O)[nH]2)cc2c1OCO2
Standard InChI:   InChI=1S/C17H19N3O5/c1-23-13-4-10(5-14-16(13)25-9-24-14)7-20(12-2-3-12)8-11-6-15(21)19-17(22)18-11/h4-6,12H,2-3,7-9H2,1H3,(H2,18,19,21,22)
Molecular Formula:   C17H19N3O5 Mol. Weight:   345.34985 Heavy Atoms:   25
Charge:   0 Is Chiral:   False logP:   0.9651
HBD:   2 HBA:   6 TPSA:   96.65
#Bonds:   30 #Rotatable Bonds:   6 Shape Complexity:   0.4117647
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
-