PDB Entry (6zcm) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 6zcm | Resolution: 1.24 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: - | DOI: None | |
Protein |
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Protein Name: YTH domain-containing protein 1 | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: Q96MU7 (YTDC1_HUMAN) | Organism: Homo sapiens |
Gene Symbol: YTHDC1 | Gene ID: 91746 |
Pocket Descriptors | |
Volume: 313.536 | Depth: 11.0954 |
Hydrophobicity: 0.701299 | Drug Score: 0.5 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 6-[[cyclopropyl-[(7-methoxy-1,3-benzodioxol-5-yl)methyl]amino]methyl]-1~{H}-pyrimidine-2,4-dione | ||
HET ID: QF2 | PubChem: 47057537 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: COc1cc(CN(C2CC2)Cc2cc(=O)[nH]c(=O)[nH]2)cc2c1OCO2 | ||
Standard InChI: InChI=1S/C17H19N3O5/c1-23-13-4-10(5-14-16(13)25-9-24-14)7-20(12-2-3-12)8-11-6-15(21)19-17(22)18-11/h4-6,12H,2-3,7-9H2,1H3,(H2,18,19,21,22) | ||
Molecular Formula: C17H19N3O5 | Mol. Weight: 345.34985 | Heavy Atoms: 25 |
Charge: 0 | Is Chiral: False | logP: 0.9651 |
HBD: 2 | HBA: 6 | TPSA: 96.65 |
#Bonds: 30 | #Rotatable Bonds: 6 | Shape Complexity: 0.4117647 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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