PDB Entry (6zcn)

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Visualizer: MichelaNGLo

PDB ID: 6zcn Resolution: 1.6 Å Exp. Method: X-RAY DIFFRACTION
PMID: - DOI: None
Protein
Protein Name: YTH domain-containing protein 1
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: Q96MU7 (YTDC1_HUMAN) Organism: Homo sapiens
Gene Symbol: YTHDC1 Gene ID: 91746
Pocket Descriptors
Volume: 291.776 Depth: 12.4322
Hydrophobicity: 0.698795 Drug Score: 0.352813
Pocket Similarity: Calculate
Ligand
Ligand Name:   N6-METHYLADENOSINE-5'-MONOPHOSPHATE
HET ID:   6MZ PubChem:   16760025
DrugBank:   - ChEMBL:   CHEMBL1230507
Canonical SMILES:   CNc1ncnc2c1ncn2[C@@H]1O[C@@H]([C@H]([C@H]1O)O)COP(=O)(O)O
Standard InChI:   InChI=1S/C11H16N5O7P/c1-12-9-6-10(14-3-13-9)16(4-15-6)11-8(18)7(17)5(23-11)2-22-24(19,20)21/h3-5,7-8,11,17-18H,2H2,1H3,(H,12,13,14)(H2,19,20,21)/t5-,7-,8-,11-/m1/s1
Molecular Formula:   C11H16N5O7P Mol. Weight:   361.2478 Heavy Atoms:   24
Charge:   0 Is Chiral:   True logP:   -1.3305
HBD:   5 HBA:   12 TPSA:   181.89
#Bonds:   30 #Rotatable Bonds:   5 Shape Complexity:   0.54545456
Stereocomplexity:   0.36363637 Ligand Type:   Small Molecule
Binding Affinity
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