PDB Entry (6t01) Download |
||
Visualizer: MichelaNGLo |
||
PDB ID: 6t01 | Resolution: 1.5 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 32101404 | DOI: 10.1021/acschembio.9b00894 | |
Protein |
|
Protein Name: YTH domain-containing protein 1 | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: Q96MU7 (YTDC1_HUMAN) | Organism: Homo sapiens |
Gene Symbol: YTHDC1 | Gene ID: 91746 |
Pocket Descriptors | |
Volume: 381.952 | Depth: 10.5906 |
Hydrophobicity: 0.709677 | Drug Score: 0.750806 |
Pocket Similarity: Calculate |
Ligand |
||
Ligand Name: 6-methyl-5-nitro-4-phenyl-1~{H}-pyrimidin-2-one | ||
HET ID: M4B | PubChem: 145994373 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: [O-][N+](=O)c1c(C)[nH]c(=O)nc1c1ccccc1 | ||
Standard InChI: InChI=1S/C11H9N3O3/c1-7-10(14(16)17)9(13-11(15)12-7)8-5-3-2-4-6-8/h2-6H,1H3,(H,12,13,15) | ||
Molecular Formula: C11H9N3O3 | Mol. Weight: 231.20746 | Heavy Atoms: 17 |
Charge: 0 | Is Chiral: False | logP: 2.1767 |
HBD: 1 | HBA: 2 | TPSA: 91.57 |
#Bonds: 19 | #Rotatable Bonds: 2 | Shape Complexity: 0.09090909 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
||
- |