PDB Entry (6t01)

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Visualizer: MichelaNGLo

PDB ID: 6t01 Resolution: 1.5 Å Exp. Method: X-RAY DIFFRACTION
PMID: 32101404 DOI: 10.1021/acschembio.9b00894
Protein
Protein Name: YTH domain-containing protein 1
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: Q96MU7 (YTDC1_HUMAN) Organism: Homo sapiens
Gene Symbol: YTHDC1 Gene ID: 91746
Pocket Descriptors
Volume: 381.952 Depth: 10.5906
Hydrophobicity: 0.709677 Drug Score: 0.750806
Pocket Similarity: Calculate
Ligand
Ligand Name:   6-methyl-5-nitro-4-phenyl-1~{H}-pyrimidin-2-one
HET ID:   M4B PubChem:   145994373
DrugBank:   - ChEMBL:   -
Canonical SMILES:   [O-][N+](=O)c1c(C)[nH]c(=O)nc1c1ccccc1
Standard InChI:   InChI=1S/C11H9N3O3/c1-7-10(14(16)17)9(13-11(15)12-7)8-5-3-2-4-6-8/h2-6H,1H3,(H,12,13,15)
Molecular Formula:   C11H9N3O3 Mol. Weight:   231.20746 Heavy Atoms:   17
Charge:   0 Is Chiral:   False logP:   2.1767
HBD:   1 HBA:   2 TPSA:   91.57
#Bonds:   19 #Rotatable Bonds:   2 Shape Complexity:   0.09090909
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
-