PDB Entry (6yno) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 6yno | Resolution: 1.96 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: - | DOI: None | |
Protein |
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Protein Name: YTH domain-containing protein 1 | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: Q96MU7 (YTDC1_HUMAN) | Organism: Homo sapiens |
Gene Symbol: YTHDC1 | Gene ID: 91746 |
Pocket Descriptors | |
Volume: 434.304 | Depth: 16.9988 |
Hydrophobicity: 0.746154 | Drug Score: 0.351904 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 6-[[methyl-[(1-phenylpyrazol-3-yl)methyl]amino]methyl]-1~{H}-pyrimidine-2,4-dione | ||
HET ID: P0W | PubChem: 51086836 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: CN(Cc1ccn(n1)c1ccccc1)Cc1cc(=O)[nH]c(=O)[nH]1 | ||
Standard InChI: InChI=1S/C16H17N5O2/c1-20(11-13-9-15(22)18-16(23)17-13)10-12-7-8-21(19-12)14-5-3-2-4-6-14/h2-9H,10-11H2,1H3,(H2,17,18,22,23) | ||
Molecular Formula: C16H17N5O2 | Mol. Weight: 311.33847 | Heavy Atoms: 23 |
Charge: 0 | Is Chiral: False | logP: 0.8809 |
HBD: 2 | HBA: 5 | TPSA: 86.78 |
#Bonds: 27 | #Rotatable Bonds: 5 | Shape Complexity: 0.1875 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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