PDB Entry (6yno)

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PDB ID: 6yno Resolution: 1.96 Å Exp. Method: X-RAY DIFFRACTION
PMID: - DOI: None
Protein
Protein Name: YTH domain-containing protein 1
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: Q96MU7 (YTDC1_HUMAN) Organism: Homo sapiens
Gene Symbol: YTHDC1 Gene ID: 91746
Pocket Descriptors
Volume: 434.304 Depth: 16.9988
Hydrophobicity: 0.746154 Drug Score: 0.351904
Pocket Similarity: Calculate
Ligand
Ligand Name:   6-[[methyl-[(1-phenylpyrazol-3-yl)methyl]amino]methyl]-1~{H}-pyrimidine-2,4-dione
HET ID:   P0W PubChem:   51086836
DrugBank:   - ChEMBL:   -
Canonical SMILES:   CN(Cc1ccn(n1)c1ccccc1)Cc1cc(=O)[nH]c(=O)[nH]1
Standard InChI:   InChI=1S/C16H17N5O2/c1-20(11-13-9-15(22)18-16(23)17-13)10-12-7-8-21(19-12)14-5-3-2-4-6-14/h2-9H,10-11H2,1H3,(H2,17,18,22,23)
Molecular Formula:   C16H17N5O2 Mol. Weight:   311.33847 Heavy Atoms:   23
Charge:   0 Is Chiral:   False logP:   0.8809
HBD:   2 HBA:   5 TPSA:   86.78
#Bonds:   27 #Rotatable Bonds:   5 Shape Complexity:   0.1875
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
-