PDB Entry (6ynm) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 6ynm | Resolution: 1.5 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: - | DOI: None | |
Protein |
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Protein Name: YTH domain-containing protein 1 | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: Q96MU7 (YTDC1_HUMAN) | Organism: Homo sapiens |
Gene Symbol: YTHDC1 | Gene ID: 91746 |
Pocket Descriptors | |
Volume: 595.712 | Depth: 12.687 |
Hydrophobicity: 0.713043 | Drug Score: 0.803923 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 1-[(2~{R},5~{S})-2-(3-chlorophenyl)-5-methyl-morpholin-4-yl]-3-methoxy-propan-2-ol | ||
HET ID: P1Q | PubChem: 39242981 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: C[C@H]1CO[C@@H](CN1)c1cccc(c1)Cl | ||
Standard InChI: InChI=1S/C11H14ClNO/c1-8-7-14-11(6-13-8)9-3-2-4-10(12)5-9/h2-5,8,11,13H,6-7H2,1H3/t8-,11-/m0/s1 | ||
Molecular Formula: C11H14ClNO | Mol. Weight: 211.68796 | Heavy Atoms: 14 |
Charge: 0 | Is Chiral: True | logP: 2.7182 |
HBD: 1 | HBA: 2 | TPSA: 21.26 |
#Bonds: 17 | #Rotatable Bonds: 1 | Shape Complexity: 0.45454547 |
Stereocomplexity: 0.18181819 | Ligand Type: Small Molecule |
Binding Affinity |
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