PDB Entry (6ynn) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 6ynn | Resolution: 1.2 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: - | DOI: None | |
Protein |
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Protein Name: YTH domain-containing protein 1 | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: Q96MU7 (YTDC1_HUMAN) | Organism: Homo sapiens |
Gene Symbol: YTHDC1 | Gene ID: 91746 |
Pocket Descriptors | |
Volume: 725.888 | Depth: 22.1775 |
Hydrophobicity: 0.707182 | Drug Score: 0.516739 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 6-[[(2-chloranyl-6-fluoranyl-phenyl)methyl-methyl-amino]methyl]-1~{H}-pyrimidine-2,4-dione | ||
HET ID: P0B | PubChem: 45794315 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: CN(Cc1c(F)cccc1Cl)Cc1cc(=O)[nH]c(=O)[nH]1 | ||
Standard InChI: InChI=1S/C13H13ClFN3O2/c1-18(6-8-5-12(19)17-13(20)16-8)7-9-10(14)3-2-4-11(9)15/h2-5H,6-7H2,1H3,(H2,16,17,19,20) | ||
Molecular Formula: C13H13ClFN3O2 | Mol. Weight: 297.71262 | Heavy Atoms: 20 |
Charge: 0 | Is Chiral: False | logP: 1.4877 |
HBD: 2 | HBA: 3 | TPSA: 68.96 |
#Bonds: 23 | #Rotatable Bonds: 4 | Shape Complexity: 0.23076923 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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