PDB Entry (6ynn)

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PDB ID: 6ynn Resolution: 1.2 Å Exp. Method: X-RAY DIFFRACTION
PMID: - DOI: None
Protein
Protein Name: YTH domain-containing protein 1
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: Q96MU7 (YTDC1_HUMAN) Organism: Homo sapiens
Gene Symbol: YTHDC1 Gene ID: 91746
Pocket Descriptors
Volume: 725.888 Depth: 22.1775
Hydrophobicity: 0.707182 Drug Score: 0.516739
Pocket Similarity: Calculate
Ligand
Ligand Name:   6-[[(2-chloranyl-6-fluoranyl-phenyl)methyl-methyl-amino]methyl]-1~{H}-pyrimidine-2,4-dione
HET ID:   P0B PubChem:   45794315
DrugBank:   - ChEMBL:   -
Canonical SMILES:   CN(Cc1c(F)cccc1Cl)Cc1cc(=O)[nH]c(=O)[nH]1
Standard InChI:   InChI=1S/C13H13ClFN3O2/c1-18(6-8-5-12(19)17-13(20)16-8)7-9-10(14)3-2-4-11(9)15/h2-5H,6-7H2,1H3,(H2,16,17,19,20)
Molecular Formula:   C13H13ClFN3O2 Mol. Weight:   297.71262 Heavy Atoms:   20
Charge:   0 Is Chiral:   False logP:   1.4877
HBD:   2 HBA:   3 TPSA:   68.96
#Bonds:   23 #Rotatable Bonds:   4 Shape Complexity:   0.23076923
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
-