PDB Entry (6yl9)

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Visualizer: MichelaNGLo

PDB ID: 6yl9 Resolution: 1.5 Å Exp. Method: X-RAY DIFFRACTION
PMID: - DOI: None
Protein
Protein Name: YTH domain-containing protein 1
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: Q96MU7 (YTDC1_HUMAN) Organism: Homo sapiens
Gene Symbol: YTHDC1 Gene ID: 91746
Pocket Descriptors
Volume: 610.176 Depth: 17.7358
Hydrophobicity: 0.751724 Drug Score: 0.741886
Pocket Similarity: Calculate
Ligand
Ligand Name:   3-[(2~{R},5~{S})-2-(2,5-dimethylphenyl)-5-methyl-morpholin-4-yl]propane-1-sulfonamide
HET ID:   OXB PubChem:   98773219
DrugBank:   - ChEMBL:   -
Canonical SMILES:   Cc1ccc(c(c1)[C@H]1OC[C@@H](N(C1)CCCS(=O)(=O)N)C)C
Standard InChI:   InChI=1S/C16H26N2O3S/c1-12-5-6-13(2)15(9-12)16-10-18(14(3)11-21-16)7-4-8-22(17,19)20/h5-6,9,14,16H,4,7-8,10-11H2,1-3H3,(H2,17,19,20)/t14-,16-/m0/s1
Molecular Formula:   C16H26N2O3S Mol. Weight:   326.45425 Heavy Atoms:   22
Charge:   0 Is Chiral:   True logP:   3.4628
HBD:   1 HBA:   5 TPSA:   81.01
#Bonds:   25 #Rotatable Bonds:   5 Shape Complexity:   0.625
Stereocomplexity:   0.125 Ligand Type:   Small Molecule
Binding Affinity
-