PDB Entry (6yni) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 6yni | Resolution: 1.36 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: - | DOI: None | |
Protein |
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Protein Name: YTH domain-containing protein 1 | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: Q96MU7 (YTDC1_HUMAN) | Organism: Homo sapiens |
Gene Symbol: YTHDC1 | Gene ID: 91746 |
Pocket Descriptors | |
Volume: 600.0 | Depth: 11.9063 |
Hydrophobicity: 0.722222 | Drug Score: 0.914947 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: (2~{R},3~{R})-2-(3-chlorophenyl)-3,5,5-trimethyl-morpholine | ||
HET ID: P0Q | PubChem: 51349454 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: C[C@H]1NC(C)(C)CO[C@@H]1c1cccc(c1)Cl | ||
Standard InChI: InChI=1S/C13H18ClNO/c1-9-12(16-8-13(2,3)15-9)10-5-4-6-11(14)7-10/h4-7,9,12,15H,8H2,1-3H3/t9-,12+/m1/s1 | ||
Molecular Formula: C13H18ClNO | Mol. Weight: 239.74112 | Heavy Atoms: 16 |
Charge: 0 | Is Chiral: True | logP: 3.4968 |
HBD: 1 | HBA: 2 | TPSA: 21.26 |
#Bonds: 19 | #Rotatable Bonds: 1 | Shape Complexity: 0.53846157 |
Stereocomplexity: 0.15384616 | Ligand Type: Small Molecule |
Binding Affinity |
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