PDB Entry (6t0a)

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Visualizer: MichelaNGLo

PDB ID: 6t0a Resolution: 2.02 Å Exp. Method: X-RAY DIFFRACTION
PMID: 32101404 DOI: 10.1021/acschembio.9b00894
Protein
Protein Name: YTH domain-containing protein 1
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: Q96MU7 (YTDC1_HUMAN) Organism: Homo sapiens
Gene Symbol: YTHDC1 Gene ID: 91746
Pocket Descriptors
Volume: 317.312 Depth: 11.655
Hydrophobicity: 0.708861 Drug Score: 0.507542
Pocket Similarity: Calculate
Ligand
Ligand Name:   (~{R})-azanyl(pyridin-3-yl)methanethiol
HET ID:   M58 PubChem:   146018697
DrugBank:   - ChEMBL:   -
Canonical SMILES:   N[C@@H](c1cccnc1)S
Standard InChI:   InChI=1S/C6H8N2S/c7-6(9)5-2-1-3-8-4-5/h1-4,6,9H,7H2/t6-/m1/s1
Molecular Formula:   C6H8N2S Mol. Weight:   140.20612 Heavy Atoms:   9
Charge:   0 Is Chiral:   True logP:   1.669
HBD:   2 HBA:   3 TPSA:   77.71
#Bonds:   10 #Rotatable Bonds:   1 Shape Complexity:   0.16666667
Stereocomplexity:   0.16666667 Ligand Type:   Small Molecule
Binding Affinity
-