PDB Entry (6t0a) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 6t0a | Resolution: 2.02 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 32101404 | DOI: 10.1021/acschembio.9b00894 | |
Protein |
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Protein Name: YTH domain-containing protein 1 | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: Q96MU7 (YTDC1_HUMAN) | Organism: Homo sapiens |
Gene Symbol: YTHDC1 | Gene ID: 91746 |
Pocket Descriptors | |
Volume: 317.312 | Depth: 11.655 |
Hydrophobicity: 0.708861 | Drug Score: 0.507542 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: (~{R})-azanyl(pyridin-3-yl)methanethiol | ||
HET ID: M58 | PubChem: 146018697 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: N[C@@H](c1cccnc1)S | ||
Standard InChI: InChI=1S/C6H8N2S/c7-6(9)5-2-1-3-8-4-5/h1-4,6,9H,7H2/t6-/m1/s1 | ||
Molecular Formula: C6H8N2S | Mol. Weight: 140.20612 | Heavy Atoms: 9 |
Charge: 0 | Is Chiral: True | logP: 1.669 |
HBD: 2 | HBA: 3 | TPSA: 77.71 |
#Bonds: 10 | #Rotatable Bonds: 1 | Shape Complexity: 0.16666667 |
Stereocomplexity: 0.16666667 | Ligand Type: Small Molecule |
Binding Affinity |
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