PDB Entry (6ynk)

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PDB ID: 6ynk Resolution: 1.3 Å Exp. Method: X-RAY DIFFRACTION
PMID: - DOI: None
Protein
Protein Name: YTH domain-containing protein 1
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: Q96MU7 (YTDC1_HUMAN) Organism: Homo sapiens
Gene Symbol: YTHDC1 Gene ID: 91746
Pocket Descriptors
Volume: 591.936 Depth: 22.0943
Hydrophobicity: 0.7125 Drug Score: 0.349941
Pocket Similarity: Calculate
Ligand
Ligand Name:   6-[[furan-2-ylmethyl(methyl)amino]methyl]-5~{H}-pyrimidine-2,4-dione
HET ID:   P0K PubChem:   146681122
DrugBank:   - ChEMBL:   -
Canonical SMILES:   O=C1CC(=NC(=O)N1)CN(Cc1ccco1)C
Standard InChI:   InChI=1S/C11H13N3O3/c1-14(7-9-3-2-4-17-9)6-8-5-10(15)13-11(16)12-8/h2-4H,5-7H2,1H3,(H,13,15,16)
Molecular Formula:   C11H13N3O3 Mol. Weight:   235.23923 Heavy Atoms:   17
Charge:   0 Is Chiral:   False logP:   0.5567
HBD:   1 HBA:   6 TPSA:   74.91
#Bonds:   18 #Rotatable Bonds:   4 Shape Complexity:   0.36363637
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
-