PDB Entry (6ynk) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 6ynk | Resolution: 1.3 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: - | DOI: None | |
Protein |
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Protein Name: YTH domain-containing protein 1 | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: Q96MU7 (YTDC1_HUMAN) | Organism: Homo sapiens |
Gene Symbol: YTHDC1 | Gene ID: 91746 |
Pocket Descriptors | |
Volume: 591.936 | Depth: 22.0943 |
Hydrophobicity: 0.7125 | Drug Score: 0.349941 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 6-[[furan-2-ylmethyl(methyl)amino]methyl]-5~{H}-pyrimidine-2,4-dione | ||
HET ID: P0K | PubChem: 146681122 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: O=C1CC(=NC(=O)N1)CN(Cc1ccco1)C | ||
Standard InChI: InChI=1S/C11H13N3O3/c1-14(7-9-3-2-4-17-9)6-8-5-10(15)13-11(16)12-8/h2-4H,5-7H2,1H3,(H,13,15,16) | ||
Molecular Formula: C11H13N3O3 | Mol. Weight: 235.23923 | Heavy Atoms: 17 |
Charge: 0 | Is Chiral: False | logP: 0.5567 |
HBD: 1 | HBA: 6 | TPSA: 74.91 |
#Bonds: 18 | #Rotatable Bonds: 4 | Shape Complexity: 0.36363637 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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