PDB Entry (6t02) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 6t02 | Resolution: 1.1 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 32101404 | DOI: 10.1021/acschembio.9b00894 | |
Protein |
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Protein Name: YTH domain-containing protein 1 | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: Q96MU7 (YTDC1_HUMAN) | Organism: Homo sapiens |
Gene Symbol: YTHDC1 | Gene ID: 91746 |
Pocket Descriptors | |
Volume: 262.976 | Depth: 10.3769 |
Hydrophobicity: 0.671429 | Drug Score: 0.101239 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: (~{S})-phenyl-[(2~{S})-pyrrolidin-2-yl]methanol | ||
HET ID: M5E | PubChem: 12628020 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: C1CC(NC1)C(C2=CC=CC=C2)O | ||
Standard InChI: InChI=1S/C11H15NO/c13-11(10-7-4-8-12-10)9-5-2-1-3-6-9/h1-3,5-6,10-13H,4,7-8H2 | ||
Molecular Formula: C11H15NO | Mol. Weight: 177.2429 | Heavy Atoms: 13 |
Charge: 0 | Is Chiral: True | logP: 1.8008 |
HBD: 2 | HBA: 2 | TPSA: 32.26 |
#Bonds: 14 | #Rotatable Bonds: 2 | Shape Complexity: 0.45454547 |
Stereocomplexity: 0.18181819 | Ligand Type: Small Molecule |
Binding Affinity |
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