PDB Entry (6t02)

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Visualizer: MichelaNGLo

PDB ID: 6t02 Resolution: 1.1 Å Exp. Method: X-RAY DIFFRACTION
PMID: 32101404 DOI: 10.1021/acschembio.9b00894
Protein
Protein Name: YTH domain-containing protein 1
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: Q96MU7 (YTDC1_HUMAN) Organism: Homo sapiens
Gene Symbol: YTHDC1 Gene ID: 91746
Pocket Descriptors
Volume: 262.976 Depth: 10.3769
Hydrophobicity: 0.671429 Drug Score: 0.101239
Pocket Similarity: Calculate
Ligand
Ligand Name:   (~{S})-phenyl-[(2~{S})-pyrrolidin-2-yl]methanol
HET ID:   M5E PubChem:   12628020
DrugBank:   - ChEMBL:   -
Canonical SMILES:   C1CC(NC1)C(C2=CC=CC=C2)O
Standard InChI:   InChI=1S/C11H15NO/c13-11(10-7-4-8-12-10)9-5-2-1-3-6-9/h1-3,5-6,10-13H,4,7-8H2
Molecular Formula:   C11H15NO Mol. Weight:   177.2429 Heavy Atoms:   13
Charge:   0 Is Chiral:   True logP:   1.8008
HBD:   2 HBA:   2 TPSA:   32.26
#Bonds:   14 #Rotatable Bonds:   2 Shape Complexity:   0.45454547
Stereocomplexity:   0.18181819 Ligand Type:   Small Molecule
Binding Affinity
-