PDB Entry (6jf0)

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Visualizer: MichelaNGLo

PDB ID: 6jf0 Resolution: 3.4 Å Exp. Method: X-RAY DIFFRACTION
PMID: 31991094 DOI: 10.1016/j.chembiol.2020.01.006
Protein
Protein Name: Peroxisome proliferator-activated receptor gamma
Protein Class: HYDROLASE
Uniprot ID/ACC: P37231 (PPARG_HUMAN) Organism: Homo sapiens
Gene Symbol: PPARG Gene ID: 5468
Pocket Descriptors
Volume: 1350.85 Depth: 35.3635
Hydrophobicity: 0.732227 Drug Score: 0.99166
Pocket Similarity: Calculate
Ligand
Ligand Name:   methyl (2~{S})-3-[4-[3-(4-methoxy-2-oxidanyl-phenyl)prop-2-ynoyloxy]phenyl]-2-[[2-(phenylcarbonyl)phenyl]amino]propanoate
HET ID:   EB6 PubChem:   145915876
DrugBank:   - ChEMBL:   -
Canonical SMILES:   COC(=O)[C@@H](Nc1ccccc1C(=O)c1ccccc1)Cc1ccc(cc1)OC(=O)C#Cc1ccc(cc1O)OC
Standard InChI:   InChI=1S/C33H27NO7/c1-39-26-18-14-23(30(35)21-26)15-19-31(36)41-25-16-12-22(13-17-25)20-29(33(38)40-2)34-28-11-7-6-10-27(28)32(37)24-8-4-3-5-9-24/h3-14,16-18,21,29,34-35H,20H2,1-2H3/t29-/m0/s1
Molecular Formula:   C33H27NO7 Mol. Weight:   549.57 Heavy Atoms:   41
Charge:   0 Is Chiral:   True logP:   4.8581
HBD:   2 HBA:   8 TPSA:   111.16
#Bonds:   45 #Rotatable Bonds:   11 Shape Complexity:   0.12903225
Stereocomplexity:   0.030303031 Ligand Type:   Small Molecule
Binding Affinity
-