PDB Entry (6saq)

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Visualizer: MichelaNGLo

PDB ID: 6saq Resolution: 2.02 Å Exp. Method: X-RAY DIFFRACTION
PMID: - DOI: None
Protein
Protein Name: NADH-quinone oxidoreductase subunit F
Protein Class: OXIDOREDUCTASE
Uniprot ID/ACC: O66841 (NUOF_AQUAE) Organism: Aquifex aeolicus
Gene Symbol: - Gene ID: -
Pocket Descriptors
Volume: 370.24 Depth: 29.9027
Hydrophobicity: 0.692308 Drug Score: 0.100349
Pocket Similarity: Calculate
Ligand
Ligand Name:   [[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-[[(1~{E},3~{Z})-5-azanyl-4-oxidanyl-5-oxidanylidene-penta-1,3-dienyl]-methanoyl-amino]-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate
HET ID:   L3W PubChem:   146676952
DrugBank:   - ChEMBL:   -
Canonical SMILES:   O=CN([C@@H]1O[C@@H]([C@H]([C@H]1O)O)CO[P@@](=O)(O[P@](=O)(OC[C@H]1O[C@H]([C@@H]([C@@H]1O)O)n1cnc2c1ncnc2N)O)O)/C=C/C=C(/C(=O)N)O
Standard InChI:   InChI=1S/C21H29N7O16P2/c22-17-12-19(25-6-24-17)28(7-26-12)21-16(34)14(32)11(43-21)5-41-46(38,39)44-45(36,37)40-4-10-13(31)15(33)20(42-10)27(8-29)3-1-2-9(30)18(23)35/h1-3,6-8,10-11,13-16,20-21,30-34H,4-5H2,(H2,23,35)(H,36,37)(H,38,39)(H2,22,24,25)/b3-1+,9-2-/t10-,11-,13-,14-,15-,16-,20-,21-/m1/s1
Molecular Formula:   C21H29N7O16P2 Mol. Weight:   697.43976 Heavy Atoms:   46
Charge:   0 Is Chiral:   True logP:   -1.4583
HBD:   9 HBA:   23 TPSA:   374.54
#Bonds:   57 #Rotatable Bonds:   14 Shape Complexity:   0.47619048
Stereocomplexity:   0.47619048 Ligand Type:   Small Molecule
Binding Affinity
-