PDB Entry (6sqy)

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Visualizer: MichelaNGLo

PDB ID: 6sqy Resolution: 1.9 Å Exp. Method: X-RAY DIFFRACTION
PMID: 31954130 DOI: 10.1016/j.jmb.2020.01.005
Protein
Protein Name: dCTP pyrophosphatase 1
Protein Class: HYDROLASE
Uniprot ID/ACC: Q9QY93 (DCTP1_MOUSE) Organism: Mus musculus
Gene Symbol: Dctpp1 Gene ID: 66422
Pocket Descriptors
Volume: 455.232 Depth: 23.9633
Hydrophobicity: 0.833333 Drug Score: 0.809948
Pocket Similarity: Calculate
Ligand
Ligand Name:   2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
HET ID:   DCM PubChem:   13945
DrugBank:   DB03798 ChEMBL:   CHEMBL374699
Canonical SMILES:   O[C@H]1C[C@@H](O[C@@H]1COP(=O)(O)O)n1ccc(nc1=O)N
Standard InChI:   InChI=1S/C9H14N3O7P/c10-7-1-2-12(9(14)11-7)8-3-5(13)6(19-8)4-18-20(15,16)17/h1-2,5-6,8,13H,3-4H2,(H2,10,11,14)(H2,15,16,17)/t5-,6+,8+/m0/s1
Molecular Formula:   C9H14N3O7P Mol. Weight:   307.1971 Heavy Atoms:   20
Charge:   0 Is Chiral:   True logP:   -0.8356
HBD:   4 HBA:   10 TPSA:   166.94
#Bonds:   24 #Rotatable Bonds:   4 Shape Complexity:   0.5555556
Stereocomplexity:   0.33333334 Ligand Type:   Small Molecule
Binding Affinity
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