PDB Entry (6sqy) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 6sqy | Resolution: 1.9 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 31954130 | DOI: 10.1016/j.jmb.2020.01.005 | |
Protein |
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Protein Name: dCTP pyrophosphatase 1 | |
Protein Class: HYDROLASE | |
Uniprot ID/ACC: Q9QY93 (DCTP1_MOUSE) | Organism: Mus musculus |
Gene Symbol: Dctpp1 | Gene ID: 66422 |
Pocket Descriptors | |
Volume: 455.232 | Depth: 23.9633 |
Hydrophobicity: 0.833333 | Drug Score: 0.809948 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE | ||
HET ID: DCM | PubChem: 13945 | |
DrugBank: DB03798 | ChEMBL: CHEMBL374699 | |
Canonical SMILES: O[C@H]1C[C@@H](O[C@@H]1COP(=O)(O)O)n1ccc(nc1=O)N | ||
Standard InChI: InChI=1S/C9H14N3O7P/c10-7-1-2-12(9(14)11-7)8-3-5(13)6(19-8)4-18-20(15,16)17/h1-2,5-6,8,13H,3-4H2,(H2,10,11,14)(H2,15,16,17)/t5-,6+,8+/m0/s1 | ||
Molecular Formula: C9H14N3O7P | Mol. Weight: 307.1971 | Heavy Atoms: 20 |
Charge: 0 | Is Chiral: True | logP: -0.8356 |
HBD: 4 | HBA: 10 | TPSA: 166.94 |
#Bonds: 24 | #Rotatable Bonds: 4 | Shape Complexity: 0.5555556 |
Stereocomplexity: 0.33333334 | Ligand Type: Small Molecule |
Binding Affinity |
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