PDB Entry (6sqw)

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Visualizer: MichelaNGLo

PDB ID: 6sqw Resolution: 1.8 Å Exp. Method: X-RAY DIFFRACTION
PMID: 31954130 DOI: 10.1016/j.jmb.2020.01.005
Protein
Protein Name: dCTP pyrophosphatase 1
Protein Class: HYDROLASE
Uniprot ID/ACC: Q9QY93 (DCTP1_MOUSE) Organism: Mus musculus
Gene Symbol: Dctpp1 Gene ID: 66422
Pocket Descriptors
Volume: 577.344 Depth: 28.0114
Hydrophobicity: 0.8125 Drug Score: 0.820362
Pocket Similarity: Calculate
Ligand
Ligand Name:   5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE
HET ID:   5CM PubChem:   102276
DrugBank:   - ChEMBL:   CHEMBL1230393
Canonical SMILES:   O[C@H]1C[C@@H](O[C@@H]1COP(=O)(O)O)n1cc(C)c(nc1=O)N
Standard InChI:   InChI=1S/C10H16N3O7P/c1-5-3-13(10(15)12-9(5)11)8-2-6(14)7(20-8)4-19-21(16,17)18/h3,6-8,14H,2,4H2,1H3,(H2,11,12,15)(H2,16,17,18)/t6-,7+,8+/m0/s1
Molecular Formula:   C10H16N3O7P Mol. Weight:   321.2237 Heavy Atoms:   21
Charge:   0 Is Chiral:   True logP:   -0.5272
HBD:   4 HBA:   10 TPSA:   166.94
#Bonds:   25 #Rotatable Bonds:   4 Shape Complexity:   0.6
Stereocomplexity:   0.3 Ligand Type:   Small Molecule
Binding Affinity
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