PDB Entry (6sqz)

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Visualizer: MichelaNGLo

PDB ID: 6sqz Resolution: 1.9 Å Exp. Method: X-RAY DIFFRACTION
PMID: 31954130 DOI: 10.1016/j.jmb.2020.01.005
Protein
Protein Name: dCTP pyrophosphatase 1
Protein Class: HYDROLASE
Uniprot ID/ACC: Q9QY93 (DCTP1_MOUSE) Organism: Mus musculus
Gene Symbol: Dctpp1 Gene ID: 66422
Pocket Descriptors
Volume: 977.152 Depth: 25.0886
Hydrophobicity: 0.751295 Drug Score: 0.890795
Pocket Similarity: Calculate
Ligand
Ligand Name:   2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine
HET ID:   0KX PubChem:   465708
DrugBank:   - ChEMBL:   -
Canonical SMILES:   O[C@H]1C[C@@H](O[C@@H]1CO[P@@](=O)(N[P@](=O)(OP(=O)(O)O)O)O)n1ccc(nc1=O)N
Standard InChI:   InChI=1S/C9H17N4O12P3/c10-7-1-2-13(9(15)11-7)8-3-5(14)6(24-8)4-23-26(16,17)12-27(18,19)25-28(20,21)22/h1-2,5-6,8,14H,3-4H2,(H2,10,11,15)(H2,20,21,22)(H3,12,16,17,18,19)/t5-,6+,8+/m0/s1
Molecular Formula:   C9H17N4O12P3 Mol. Weight:   466.17215 Heavy Atoms:   28
Charge:   0 Is Chiral:   True logP:   -0.6377
HBD:   7 HBA:   16 TPSA:   282.42
#Bonds:   32 #Rotatable Bonds:   8 Shape Complexity:   0.5555556
Stereocomplexity:   0.5555556 Ligand Type:   Small Molecule
Binding Affinity
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