PDB Entry (6sqz) Download |
||
Visualizer: MichelaNGLo |
||
PDB ID: 6sqz | Resolution: 1.9 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 31954130 | DOI: 10.1016/j.jmb.2020.01.005 | |
Protein |
|
Protein Name: dCTP pyrophosphatase 1 | |
Protein Class: HYDROLASE | |
Uniprot ID/ACC: Q9QY93 (DCTP1_MOUSE) | Organism: Mus musculus |
Gene Symbol: Dctpp1 | Gene ID: 66422 |
Pocket Descriptors | |
Volume: 977.152 | Depth: 25.0886 |
Hydrophobicity: 0.751295 | Drug Score: 0.890795 |
Pocket Similarity: Calculate |
Ligand |
||
Ligand Name: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine | ||
HET ID: 0KX | PubChem: 465708 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: O[C@H]1C[C@@H](O[C@@H]1CO[P@@](=O)(N[P@](=O)(OP(=O)(O)O)O)O)n1ccc(nc1=O)N | ||
Standard InChI: InChI=1S/C9H17N4O12P3/c10-7-1-2-13(9(15)11-7)8-3-5(14)6(24-8)4-23-26(16,17)12-27(18,19)25-28(20,21)22/h1-2,5-6,8,14H,3-4H2,(H2,10,11,15)(H2,20,21,22)(H3,12,16,17,18,19)/t5-,6+,8+/m0/s1 | ||
Molecular Formula: C9H17N4O12P3 | Mol. Weight: 466.17215 | Heavy Atoms: 28 |
Charge: 0 | Is Chiral: True | logP: -0.6377 |
HBD: 7 | HBA: 16 | TPSA: 282.42 |
#Bonds: 32 | #Rotatable Bonds: 8 | Shape Complexity: 0.5555556 |
Stereocomplexity: 0.5555556 | Ligand Type: Small Molecule |
Binding Affinity |
||
- |