PDB Entry (6odc)

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Visualizer: MichelaNGLo

PDB ID: 6odc Resolution: 2.8 Å Exp. Method: X-RAY DIFFRACTION
PMID: - DOI: None
Protein
Protein Name: Histone deacetylase 8
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: Q9BY41 (HDAC8_HUMAN) Organism: Homo sapiens
Gene Symbol: HDAC8 Gene ID: 55869
Pocket Descriptors
Volume: 244.352 Depth: 30.4169
Hydrophobicity: 0.703704 Drug Score: 0.00557717
Pocket Similarity: Calculate
Ligand
Ligand Name:   (2E)-3-[2-(3-cyclopentyl-5,5-dimethyl-2-oxoimidazolidin-1-yl)phenyl]-N-hydroxyprop-2-enamide
HET ID:   M7Y PubChem:   146014939
DrugBank:   - ChEMBL:   -
Canonical SMILES:   ONC(=O)/C=C/c1ccccc1N1C(=O)N(CC1(C)C)C1CCCC1
Standard InChI:   InChI=1S/C19H25N3O3/c1-19(2)13-21(15-8-4-5-9-15)18(24)22(19)16-10-6-3-7-14(16)11-12-17(23)20-25/h3,6-7,10-12,15,25H,4-5,8-9,13H2,1-2H3,(H,20,23)/b12-11+
Molecular Formula:   C19H25N3O3 Mol. Weight:   343.4201 Heavy Atoms:   25
Charge:   0 Is Chiral:   False logP:   3.5622
HBD:   2 HBA:   6 TPSA:   72.88
#Bonds:   27 #Rotatable Bonds:   5 Shape Complexity:   0.47368422
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
-