PDB Entry (6odb)

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Visualizer: MichelaNGLo

PDB ID: 6odb Resolution: 2.7 Å Exp. Method: X-RAY DIFFRACTION
PMID: - DOI: None
Protein
Protein Name: Histone deacetylase 8
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: Q9BY41 (HDAC8_HUMAN) Organism: Homo sapiens
Gene Symbol: HDAC8 Gene ID: 55869
Pocket Descriptors
Volume: 62.976 Depth: 12.4315
Hydrophobicity: 0.722222 Drug Score: 0.398613
Pocket Similarity: Calculate
Ligand
Ligand Name:   N-{2-[(1E)-3-(hydroxyamino)-3-oxoprop-1-en-1-yl]phenyl}-2-phenoxybenzamide
HET ID:   M8G PubChem:   122514056
DrugBank:   - ChEMBL:   -
Canonical SMILES:   ONC(=O)/C=C/c1ccccc1NC(=O)c1ccccc1Oc1ccccc1
Standard InChI:   InChI=1S/C22H18N2O4/c25-21(24-27)15-14-16-8-4-6-12-19(16)23-22(26)18-11-5-7-13-20(18)28-17-9-2-1-3-10-17/h1-15,27H,(H,23,26)(H,24,25)/b15-14+
Molecular Formula:   C22H18N2O4 Mol. Weight:   374.3893 Heavy Atoms:   28
Charge:   0 Is Chiral:   False logP:   4.7137
HBD:   3 HBA:   6 TPSA:   87.66
#Bonds:   30 #Rotatable Bonds:   8 Shape Complexity:   0.0
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
-