PDB Entry (6oda) Download |
||
Visualizer: MichelaNGLo |
||
PDB ID: 6oda | Resolution: 2.88 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: - | DOI: None | |
Protein |
|
Protein Name: Histone deacetylase 8 | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: Q9BY41 (HDAC8_HUMAN) | Organism: Homo sapiens |
Gene Symbol: HDAC8 | Gene ID: 55869 |
Pocket Descriptors | |
Volume: 68.672 | Depth: 12.827 |
Hydrophobicity: 0.698113 | Drug Score: 0.27591 |
Pocket Similarity: Calculate |
Ligand |
||
Ligand Name: N-{2-[3-(hydroxyamino)-3-oxopropyl]phenyl}-3-(trifluoromethyl)benzamide | ||
HET ID: C7 | PubChem: 146014938 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: ONC(=O)CCc1ccccc1NC(=O)c1cccc(c1)C(F)(F)F | ||
Standard InChI: InChI=1S/C17H15F3N2O3/c18-17(19,20)13-6-3-5-12(10-13)16(24)21-14-7-2-1-4-11(14)8-9-15(23)22-25/h1-7,10,25H,8-9H2,(H,21,24)(H,22,23) | ||
Molecular Formula: C17H15F3N2O3 | Mol. Weight: 352.3078 | Heavy Atoms: 25 |
Charge: 0 | Is Chiral: False | logP: 3.8596 |
HBD: 3 | HBA: 5 | TPSA: 78.43 |
#Bonds: 26 | #Rotatable Bonds: 8 | Shape Complexity: 0.1764706 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
||
- |