PDB Entry (6oda)

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Visualizer: MichelaNGLo

PDB ID: 6oda Resolution: 2.88 Å Exp. Method: X-RAY DIFFRACTION
PMID: - DOI: None
Protein
Protein Name: Histone deacetylase 8
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: Q9BY41 (HDAC8_HUMAN) Organism: Homo sapiens
Gene Symbol: HDAC8 Gene ID: 55869
Pocket Descriptors
Volume: 68.672 Depth: 12.827
Hydrophobicity: 0.698113 Drug Score: 0.27591
Pocket Similarity: Calculate
Ligand
Ligand Name:   N-{2-[3-(hydroxyamino)-3-oxopropyl]phenyl}-3-(trifluoromethyl)benzamide
HET ID:   C7 PubChem:   146014938
DrugBank:   - ChEMBL:   -
Canonical SMILES:   ONC(=O)CCc1ccccc1NC(=O)c1cccc(c1)C(F)(F)F
Standard InChI:   InChI=1S/C17H15F3N2O3/c18-17(19,20)13-6-3-5-12(10-13)16(24)21-14-7-2-1-4-11(14)8-9-15(23)22-25/h1-7,10,25H,8-9H2,(H,21,24)(H,22,23)
Molecular Formula:   C17H15F3N2O3 Mol. Weight:   352.3078 Heavy Atoms:   25
Charge:   0 Is Chiral:   False logP:   3.8596
HBD:   3 HBA:   5 TPSA:   78.43
#Bonds:   26 #Rotatable Bonds:   8 Shape Complexity:   0.1764706
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
-