PDB Entry (6ydx)

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PDB ID: 6ydx Resolution: 3.2 Å Exp. Method: X-RAY DIFFRACTION
PMID: 32676150 DOI: 10.1021/acsmedchemlett.0c00172
Protein
Protein Name: Leucyl-cystinyl aminopeptidase
Protein Class: HYDROLASE
Uniprot ID/ACC: Q9UIQ6 (LCAP_HUMAN) Organism: Homo sapiens
Gene Symbol: LNPEP Gene ID: 4012
Pocket Descriptors
Volume: 167.616 Depth: 20.834
Hydrophobicity: 0.691824 Drug Score: 0.0125682
Pocket Similarity: Calculate
Ligand
Ligand Name:   2-[2-[[[(4~{R},8~{S},11~{S})-11-azanyl-8-[(4-hydroxyphenyl)methyl]-6,10-bis(oxidanylidene)-1,2-dithia-5,9-diazacyclotridec-4-yl]carbonylamino]methyl]phenyl]ethanoic acid
HET ID:   ONN PubChem:   49840774
DrugBank:   - ChEMBL:   CHEMBL1277623
Canonical SMILES:   O=C1C[C@H](Cc2ccc(cc2)O)NC(=O)[C@@H](N)CCSSC[C@H](N1)C(=O)NCc1ccccc1CC(=O)O
Standard InChI:   InChI=1S/C26H32N4O6S2/c27-21-9-10-37-38-15-22(26(36)28-14-18-4-2-1-3-17(18)12-24(33)34)30-23(32)13-19(29-25(21)35)11-16-5-7-20(31)8-6-16/h1-8,19,21-22,31H,9-15,27H2,(H,28,36)(H,29,35)(H,30,32)(H,33,34)/t19-,21-,22-/m0/s1
Molecular Formula:   C26H32N4O6S2 Mol. Weight:   560.6855 Heavy Atoms:   38
Charge:   0 Is Chiral:   True logP:   3.0991
HBD:   6 HBA:   12 TPSA:   221.45
#Bonds:   43 #Rotatable Bonds:   8 Shape Complexity:   0.3846154
Stereocomplexity:   0.115384616 Ligand Type:   Small Molecule
Binding Affinity
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