PDB Entry (6ydx) Download |
||
Visualizer: MichelaNGLo |
||
PDB ID: 6ydx | Resolution: 3.2 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 32676150 | DOI: 10.1021/acsmedchemlett.0c00172 | |
Protein |
|
Protein Name: Leucyl-cystinyl aminopeptidase | |
Protein Class: HYDROLASE | |
Uniprot ID/ACC: Q9UIQ6 (LCAP_HUMAN) | Organism: Homo sapiens |
Gene Symbol: LNPEP | Gene ID: 4012 |
Pocket Descriptors | |
Volume: 167.616 | Depth: 20.834 |
Hydrophobicity: 0.691824 | Drug Score: 0.0125682 |
Pocket Similarity: Calculate |
Ligand |
||
Ligand Name: 2-[2-[[[(4~{R},8~{S},11~{S})-11-azanyl-8-[(4-hydroxyphenyl)methyl]-6,10-bis(oxidanylidene)-1,2-dithia-5,9-diazacyclotridec-4-yl]carbonylamino]methyl]phenyl]ethanoic acid | ||
HET ID: ONN | PubChem: 49840774 | |
DrugBank: - | ChEMBL: CHEMBL1277623 | |
Canonical SMILES: O=C1C[C@H](Cc2ccc(cc2)O)NC(=O)[C@@H](N)CCSSC[C@H](N1)C(=O)NCc1ccccc1CC(=O)O | ||
Standard InChI: InChI=1S/C26H32N4O6S2/c27-21-9-10-37-38-15-22(26(36)28-14-18-4-2-1-3-17(18)12-24(33)34)30-23(32)13-19(29-25(21)35)11-16-5-7-20(31)8-6-16/h1-8,19,21-22,31H,9-15,27H2,(H,28,36)(H,29,35)(H,30,32)(H,33,34)/t19-,21-,22-/m0/s1 | ||
Molecular Formula: C26H32N4O6S2 | Mol. Weight: 560.6855 | Heavy Atoms: 38 |
Charge: 0 | Is Chiral: True | logP: 3.0991 |
HBD: 6 | HBA: 12 | TPSA: 221.45 |
#Bonds: 43 | #Rotatable Bonds: 8 | Shape Complexity: 0.3846154 |
Stereocomplexity: 0.115384616 | Ligand Type: Small Molecule |
Binding Affinity |
||
- |