PDB Entry (6o5u)

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Visualizer: MichelaNGLo

PDB ID: 6o5u Resolution: 1.4 Å Exp. Method: X-RAY DIFFRACTION
PMID: 31515870 DOI: 10.1002/anie.201908535
Protein
Protein Name: Aminoglycoside N(3)-acetyltransferase
Protein Class: TRANSFERASE
Uniprot ID/ACC: Q47030 (Q47030_ENTCL) Organism: Enterobacter cloacae
Gene Symbol: - Gene ID: -
Pocket Descriptors
Volume: 1354.24 Depth: 28.2956
Hydrophobicity: 0.665468 Drug Score: 0.746389
Pocket Similarity: Calculate
Ligand
Ligand Name:   KANAMYCIN A
HET ID:   KAN PubChem:   6032
DrugBank:   DB01172 ChEMBL:   CHEMBL1384
Canonical SMILES:   OC[C@H]1O[C@H](O[C@H]2[C@H](N)C[C@@H]([C@H]([C@@H]2O)O[C@H]2O[C@H](CN)[C@H]([C@@H]([C@H]2O)O)O)N)[C@@H]([C@H]([C@@H]1O)N)O
Standard InChI:   InChI=1S/C18H36N4O11/c19-2-6-10(25)12(27)13(28)18(30-6)33-16-5(21)1-4(20)15(14(16)29)32-17-11(26)8(22)9(24)7(3-23)31-17/h4-18,23-29H,1-3,19-22H2/t4-,5+,6-,7-,8+,9-,10-,11-,12+,13-,14-,15+,16-,17-,18-/m1/s1
Molecular Formula:   C18H36N4O11 Mol. Weight:   484.49863 Heavy Atoms:   33
Charge:   0 Is Chiral:   True logP:   -4.4902
HBD:   11 HBA:   15 TPSA:   282.61
#Bonds:   50 #Rotatable Bonds:   6 Shape Complexity:   1.0
Stereocomplexity:   0.8333333 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
Binding MOAD Kd : 42000 nM