PDB Entry (6o5u) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 6o5u | Resolution: 1.4 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 31515870 | DOI: 10.1002/anie.201908535 | |
Protein |
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Protein Name: Aminoglycoside N(3)-acetyltransferase | |
Protein Class: TRANSFERASE | |
Uniprot ID/ACC: Q47030 (Q47030_ENTCL) | Organism: Enterobacter cloacae |
Gene Symbol: - | Gene ID: - |
Pocket Descriptors | |
Volume: 1354.24 | Depth: 28.2956 |
Hydrophobicity: 0.665468 | Drug Score: 0.746389 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: KANAMYCIN A | ||
HET ID: KAN | PubChem: 6032 | |
DrugBank: DB01172 | ChEMBL: CHEMBL1384 | |
Canonical SMILES: OC[C@H]1O[C@H](O[C@H]2[C@H](N)C[C@@H]([C@H]([C@@H]2O)O[C@H]2O[C@H](CN)[C@H]([C@@H]([C@H]2O)O)O)N)[C@@H]([C@H]([C@@H]1O)N)O | ||
Standard InChI: InChI=1S/C18H36N4O11/c19-2-6-10(25)12(27)13(28)18(30-6)33-16-5(21)1-4(20)15(14(16)29)32-17-11(26)8(22)9(24)7(3-23)31-17/h4-18,23-29H,1-3,19-22H2/t4-,5+,6-,7-,8+,9-,10-,11-,12+,13-,14-,15+,16-,17-,18-/m1/s1 | ||
Molecular Formula: C18H36N4O11 | Mol. Weight: 484.49863 | Heavy Atoms: 33 |
Charge: 0 | Is Chiral: True | logP: -4.4902 |
HBD: 11 | HBA: 15 | TPSA: 282.61 |
#Bonds: 50 | #Rotatable Bonds: 6 | Shape Complexity: 1.0 |
Stereocomplexity: 0.8333333 | Ligand Type: Small Molecule |
Binding Affinity |
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Database Name | Value |
Binding MOAD | Kd : 42000 nM |