PDB Entry (6np5)

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Visualizer: MichelaNGLo

PDB ID: 6np5 Resolution: 1.35 Å Exp. Method: X-RAY DIFFRACTION
PMID: 31515870 DOI: 10.1002/anie.201908535
Protein
Protein Name: Aminoglycoside N(3)-acetyltransferase
Protein Class: TRANSFERASE
Uniprot ID/ACC: Q47030 (Q47030_ENTCL) Organism: Enterobacter cloacae
Gene Symbol: - Gene ID: -
Pocket Descriptors
Volume: 1475.97 Depth: 31.3458
Hydrophobicity: 0.665505 Drug Score: 0.766804
Pocket Similarity: Calculate
Ligand
Ligand Name:   (1R,2S,3S,4R,6S)-4,6-DIAMINO-3-[(3-AMINO-3-DEOXY-ALPHA-D-GLUCOPYRANOSYL)OXY]-2-HYDROXYCYCLOHEXYL 2,6-DIAMINO-2,6-DIDEOXY-ALPHA-D-GLUCOPYRANOSIDE
HET ID:   9CS PubChem:   439318
DrugBank:   DB13673 ChEMBL:   CHEMBL176
Canonical SMILES:   OC[C@H]1O[C@H](O[C@H]2[C@H](N)C[C@@H]([C@H]([C@@H]2O)O[C@H]2O[C@H](CN)[C@H]([C@@H]([C@H]2N)O)O)N)[C@@H]([C@H]([C@@H]1O)N)O
Standard InChI:   InChI=1S/C18H37N5O10/c19-2-6-11(26)12(27)9(23)17(30-6)32-15-4(20)1-5(21)16(14(15)29)33-18-13(28)8(22)10(25)7(3-24)31-18/h4-18,24-29H,1-3,19-23H2/t4-,5+,6+,7+,8-,9+,10+,11+,12+,13+,14-,15+,16-,17+,18+/m0/s1
Molecular Formula:   C18H37N5O10 Mol. Weight:   483.5139 Heavy Atoms:   33
Charge:   0 Is Chiral:   True logP:   -3.8235
HBD:   11 HBA:   15 TPSA:   288.4
#Bonds:   50 #Rotatable Bonds:   6 Shape Complexity:   1.0
Stereocomplexity:   0.8333333 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
Binding MOAD Kd : 27000 nM