PDB Entry (6np3)

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Visualizer: MichelaNGLo

PDB ID: 6np3 Resolution: 1.15 Å Exp. Method: X-RAY DIFFRACTION
PMID: 31515870 DOI: 10.1002/anie.201908535
Protein
Protein Name: Aminoglycoside N(3)-acetyltransferase
Protein Class: TRANSFERASE
Uniprot ID/ACC: Q47030 (Q47030_ENTCL) Organism: Enterobacter cloacae
Gene Symbol: - Gene ID: -
Pocket Descriptors
Volume: 1342.02 Depth: 27.8453
Hydrophobicity: 0.652632 Drug Score: 0.681485
Pocket Similarity: Calculate
Ligand
Ligand Name:   (2R,3R,4R,5R)-2-((1S,2S,3R,4S,6R)-4,6-DIAMINO-3-((2R,3R,6S)-3-AMINO-6-(AMINOMETHYL)-TETRAHYDRO-2H-PYRAN-2-YLOXY)-2-HYDROXYCYCLOHEXYLOXY)-5-METHYL-4-(METHYLAMINO)-TETRAHYDRO-2H-PYRAN-3,5-DIOL
HET ID:   LLL PubChem:   72396
DrugBank:   DB04729 ChEMBL:   CHEMBL194126
Canonical SMILES:   NC[C@@H]1CC[C@H]([C@H](O1)O[C@@H]1[C@@H](N)C[C@H]([C@@H]([C@H]1O)O[C@H]1OC[C@]([C@@H]([C@H]1O)NC)(C)O)N)N
Standard InChI:   InChI=1S/C19H39N5O7/c1-19(27)7-28-18(13(26)16(19)24-2)31-15-11(23)5-10(22)14(12(15)25)30-17-9(21)4-3-8(6-20)29-17/h8-18,24-27H,3-7,20-23H2,1-2H3/t8-,9+,10-,11+,12-,13+,14+,15-,16+,17+,18+,19-/m0/s1
Molecular Formula:   C19H39N5O7 Mol. Weight:   449.54227 Heavy Atoms:   31
Charge:   0 Is Chiral:   True logP:   -0.7846
HBD:   8 HBA:   12 TPSA:   213.72
#Bonds:   44 #Rotatable Bonds:   6 Shape Complexity:   1.0
Stereocomplexity:   0.6315789 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
Binding MOAD Kd : 340 nM