PDB Entry (6np2)

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Visualizer: MichelaNGLo

PDB ID: 6np2 Resolution: 1.2 Å Exp. Method: X-RAY DIFFRACTION
PMID: 31515870 DOI: 10.1002/anie.201908535
Protein
Protein Name: Aminoglycoside N(3)-acetyltransferase
Protein Class: TRANSFERASE
Uniprot ID/ACC: Q47030 (Q47030_ENTCL) Organism: Enterobacter cloacae
Gene Symbol: - Gene ID: -
Pocket Descriptors
Volume: 1320.51 Depth: 28.1283
Hydrophobicity: 0.667925 Drug Score: 0.69846
Pocket Similarity: Calculate
Ligand
Ligand Name:   (1S,2S,3R,4S,6R)-4,6-diamino-3-{[(2S,3R)-3-amino-6-(aminomethyl)-3,4-dihydro-2H-pyran-2-yl]oxy}-2-hydroxycyclohexyl 3-deoxy-4-C-methyl-3-(methylamino)-beta-L-arabinopyranoside
HET ID:   SIS PubChem:   36119
DrugBank:   DB12604 ChEMBL:   CHEMBL221886
Canonical SMILES:   NCC1=CC[C@H]([C@H](O1)O[C@@H]1[C@@H](N)C[C@H]([C@@H]([C@H]1O)O[C@H]1OC[C@]([C@@H]([C@H]1O)NC)(C)O)N)N
Standard InChI:   InChI=1S/C19H37N5O7/c1-19(27)7-28-18(13(26)16(19)24-2)31-15-11(23)5-10(22)14(12(15)25)30-17-9(21)4-3-8(6-20)29-17/h3,9-18,24-27H,4-7,20-23H2,1-2H3/t9-,10+,11-,12+,13-,14-,15+,16-,17-,18-,19+/m1/s1
Molecular Formula:   C19H37N5O7 Mol. Weight:   447.52637 Heavy Atoms:   31
Charge:   0 Is Chiral:   True logP:   -0.6594
HBD:   8 HBA:   12 TPSA:   213.72
#Bonds:   43 #Rotatable Bonds:   6 Shape Complexity:   0.8947368
Stereocomplexity:   0.57894737 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
Binding MOAD Kd : 160 nM