PDB Entry (6np2) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 6np2 | Resolution: 1.2 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 31515870 | DOI: 10.1002/anie.201908535 | |
Protein |
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Protein Name: Aminoglycoside N(3)-acetyltransferase | |
Protein Class: TRANSFERASE | |
Uniprot ID/ACC: Q47030 (Q47030_ENTCL) | Organism: Enterobacter cloacae |
Gene Symbol: - | Gene ID: - |
Pocket Descriptors | |
Volume: 1320.51 | Depth: 28.1283 |
Hydrophobicity: 0.667925 | Drug Score: 0.69846 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: (1S,2S,3R,4S,6R)-4,6-diamino-3-{[(2S,3R)-3-amino-6-(aminomethyl)-3,4-dihydro-2H-pyran-2-yl]oxy}-2-hydroxycyclohexyl 3-deoxy-4-C-methyl-3-(methylamino)-beta-L-arabinopyranoside | ||
HET ID: SIS | PubChem: 36119 | |
DrugBank: DB12604 | ChEMBL: CHEMBL221886 | |
Canonical SMILES: NCC1=CC[C@H]([C@H](O1)O[C@@H]1[C@@H](N)C[C@H]([C@@H]([C@H]1O)O[C@H]1OC[C@]([C@@H]([C@H]1O)NC)(C)O)N)N | ||
Standard InChI: InChI=1S/C19H37N5O7/c1-19(27)7-28-18(13(26)16(19)24-2)31-15-11(23)5-10(22)14(12(15)25)30-17-9(21)4-3-8(6-20)29-17/h3,9-18,24-27H,4-7,20-23H2,1-2H3/t9-,10+,11-,12+,13-,14-,15+,16-,17-,18-,19+/m1/s1 | ||
Molecular Formula: C19H37N5O7 | Mol. Weight: 447.52637 | Heavy Atoms: 31 |
Charge: 0 | Is Chiral: True | logP: -0.6594 |
HBD: 8 | HBA: 12 | TPSA: 213.72 |
#Bonds: 43 | #Rotatable Bonds: 6 | Shape Complexity: 0.8947368 |
Stereocomplexity: 0.57894737 | Ligand Type: Small Molecule |
Binding Affinity |
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Database Name | Value |
Binding MOAD | Kd : 160 nM |