PDB Entry (6dqc) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 6dqc | Resolution: 1.75 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: - | DOI: None | |
Protein |
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Protein Name: Lysine-specific demethylase 5A | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: P29375 (KDM5A_HUMAN) | Organism: Homo sapiens |
Gene Symbol: KDM5A | Gene ID: 5927 |
Pocket Descriptors | |
Volume: 1005.57 | Depth: 17.2557 |
Hydrophobicity: 0.671937 | Drug Score: 0.579598 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 2-[4-{[2-(dimethylamino)ethyl](ethyl)carbamoyl}-5-(4-methoxyphenyl)-1H-pyrazol-1-yl]pyridine-4-carboxylic acid | ||
HET ID: H5Y | PubChem: 138393319 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: CCN(C(=O)c1cnn(c1c1ccc(cc1)OC)c1nccc(c1)C(=O)O)CCN(C)C | ||
Standard InChI: InChI=1S/C23H27N5O4/c1-5-27(13-12-26(2)3)22(29)19-15-25-28(20-14-17(23(30)31)10-11-24-20)21(19)16-6-8-18(32-4)9-7-16/h6-11,14-15H,5,12-13H2,1-4H3,(H,30,31) | ||
Molecular Formula: C23H27N5O4 | Mol. Weight: 437.49158 | Heavy Atoms: 32 |
Charge: 0 | Is Chiral: False | logP: 2.6648 |
HBD: 1 | HBA: 9 | TPSA: 100.79 |
#Bonds: 34 | #Rotatable Bonds: 10 | Shape Complexity: 0.3043478 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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