PDB Entry (6dqc)

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Visualizer: MichelaNGLo

PDB ID: 6dqc Resolution: 1.75 Å Exp. Method: X-RAY DIFFRACTION
PMID: - DOI: None
Protein
Protein Name: Lysine-specific demethylase 5A
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: P29375 (KDM5A_HUMAN) Organism: Homo sapiens
Gene Symbol: KDM5A Gene ID: 5927
Pocket Descriptors
Volume: 1005.57 Depth: 17.2557
Hydrophobicity: 0.671937 Drug Score: 0.579598
Pocket Similarity: Calculate
Ligand
Ligand Name:   2-[4-{[2-(dimethylamino)ethyl](ethyl)carbamoyl}-5-(4-methoxyphenyl)-1H-pyrazol-1-yl]pyridine-4-carboxylic acid
HET ID:   H5Y PubChem:   138393319
DrugBank:   - ChEMBL:   -
Canonical SMILES:   CCN(C(=O)c1cnn(c1c1ccc(cc1)OC)c1nccc(c1)C(=O)O)CCN(C)C
Standard InChI:   InChI=1S/C23H27N5O4/c1-5-27(13-12-26(2)3)22(29)19-15-25-28(20-14-17(23(30)31)10-11-24-20)21(19)16-6-8-18(32-4)9-7-16/h6-11,14-15H,5,12-13H2,1-4H3,(H,30,31)
Molecular Formula:   C23H27N5O4 Mol. Weight:   437.49158 Heavy Atoms:   32
Charge:   0 Is Chiral:   False logP:   2.6648
HBD:   1 HBA:   9 TPSA:   100.79
#Bonds:   34 #Rotatable Bonds:   10 Shape Complexity:   0.3043478
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
-