PDB Entry (6dqe)

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PDB ID: 6dqe Resolution: 1.69 Å Exp. Method: X-RAY DIFFRACTION
PMID: - DOI: None
Protein
Protein Name: Lysine-specific demethylase 5A
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: P29375 (KDM5A_HUMAN) Organism: Homo sapiens
Gene Symbol: KDM5A Gene ID: 5927
Pocket Descriptors
Volume: 1347.01 Depth: 30.371
Hydrophobicity: 0.694245 Drug Score: 0.645488
Pocket Similarity: Calculate
Ligand
Ligand Name:   2-(5-phenyl-4-{(R)-phenyl[2-(piperidin-1-yl)ethoxy]methyl}-1H-pyrazol-1-yl)pyridine-4-carboxylic acid
HET ID:   H6A PubChem:   138393321
DrugBank:   - ChEMBL:   -
Canonical SMILES:   OC(=O)c1ccnc(c1)n1ncc(c1c1ccccc1)[C@@H](c1ccccc1)OCCN1CCCCC1
Standard InChI:   InChI=1S/C29H30N4O3/c34-29(35)24-14-15-30-26(20-24)33-27(22-10-4-1-5-11-22)25(21-31-33)28(23-12-6-2-7-13-23)36-19-18-32-16-8-3-9-17-32/h1-2,4-7,10-15,20-21,28H,3,8-9,16-19H2,(H,34,35)/t28-/m1/s1
Molecular Formula:   C29H30N4O3 Mol. Weight:   482.5735 Heavy Atoms:   36
Charge:   0 Is Chiral:   True logP:   5.1623
HBD:   1 HBA:   7 TPSA:   80.48
#Bonds:   41 #Rotatable Bonds:   9 Shape Complexity:   0.27586207
Stereocomplexity:   0.03448276 Ligand Type:   Small Molecule
Binding Affinity
-