PDB Entry (6dqf) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 6dqf | Resolution: 1.69 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: - | DOI: None | |
Protein |
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Protein Name: Lysine-specific demethylase 5A | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: P29375 (KDM5A_HUMAN) | Organism: Homo sapiens |
Gene Symbol: KDM5A | Gene ID: 5927 |
Pocket Descriptors | |
Volume: 1306.18 | Depth: 30.0958 |
Hydrophobicity: 0.698582 | Drug Score: 0.64292 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 2-{1-[2-(piperidin-1-yl)ethyl]-1H-benzimidazol-2-yl}thieno[3,2-b]pyridine-7-carboxylic acid | ||
HET ID: H61 | PubChem: 133053887 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: OC(=O)c1ccnc2c1sc(c2)c1nc2c(n1CCN1CCCCC1)cccc2 | ||
Standard InChI: InChI=1S/C22H22N4O2S/c27-22(28)15-8-9-23-17-14-19(29-20(15)17)21-24-16-6-2-3-7-18(16)26(21)13-12-25-10-4-1-5-11-25/h2-3,6-9,14H,1,4-5,10-13H2,(H,27,28) | ||
Molecular Formula: C22H22N4O2S | Mol. Weight: 406.50067 | Heavy Atoms: 29 |
Charge: 0 | Is Chiral: False | logP: 4.435 |
HBD: 1 | HBA: 7 | TPSA: 99.49 |
#Bonds: 33 | #Rotatable Bonds: 5 | Shape Complexity: 0.3181818 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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