PDB Entry (6dqf)

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Visualizer: MichelaNGLo

PDB ID: 6dqf Resolution: 1.69 Å Exp. Method: X-RAY DIFFRACTION
PMID: - DOI: None
Protein
Protein Name: Lysine-specific demethylase 5A
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: P29375 (KDM5A_HUMAN) Organism: Homo sapiens
Gene Symbol: KDM5A Gene ID: 5927
Pocket Descriptors
Volume: 1306.18 Depth: 30.0958
Hydrophobicity: 0.698582 Drug Score: 0.64292
Pocket Similarity: Calculate
Ligand
Ligand Name:   2-{1-[2-(piperidin-1-yl)ethyl]-1H-benzimidazol-2-yl}thieno[3,2-b]pyridine-7-carboxylic acid
HET ID:   H61 PubChem:   133053887
DrugBank:   - ChEMBL:   -
Canonical SMILES:   OC(=O)c1ccnc2c1sc(c2)c1nc2c(n1CCN1CCCCC1)cccc2
Standard InChI:   InChI=1S/C22H22N4O2S/c27-22(28)15-8-9-23-17-14-19(29-20(15)17)21-24-16-6-2-3-7-18(16)26(21)13-12-25-10-4-1-5-11-25/h2-3,6-9,14H,1,4-5,10-13H2,(H,27,28)
Molecular Formula:   C22H22N4O2S Mol. Weight:   406.50067 Heavy Atoms:   29
Charge:   0 Is Chiral:   False logP:   4.435
HBD:   1 HBA:   7 TPSA:   99.49
#Bonds:   33 #Rotatable Bonds:   5 Shape Complexity:   0.3181818
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
-