PDB Entry (2xml) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 2xml | Resolution: 2.55 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 21914792 | DOI: 10.1074/jbc.M111.283689 | |
Protein |
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Protein Name: Lysine-specific demethylase 4C | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: Q9H3R0 (KDM4C_HUMAN) | Organism: Homo sapiens |
Gene Symbol: KDM4C | Gene ID: 23081 |
Pocket Descriptors | |
Volume: 488.0 | Depth: 18.0541 |
Hydrophobicity: 0.657143 | Drug Score: 0.145279 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: N-OXALYLGLYCINE | ||
HET ID: OGA | PubChem: 3080614 | |
DrugBank: - | ChEMBL: CHEMBL90852 | |
Canonical SMILES: OC(=O)CNC(=O)C(=O)O | ||
Standard InChI: InChI=1S/C4H5NO5/c6-2(7)1-5-3(8)4(9)10/h1H2,(H,5,8)(H,6,7)(H,9,10) | ||
Molecular Formula: C4H5NO5 | Mol. Weight: 147.0862 | Heavy Atoms: 10 |
Charge: 0 | Is Chiral: False | logP: -1.3373 |
HBD: 3 | HBA: 6 | TPSA: 103.7 |
#Bonds: 9 | #Rotatable Bonds: 4 | Shape Complexity: 0.25 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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Database Name | Value |
PDBBind | IC50 : 500000 nM |